Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq20592 122 2e-22 seq7630 84.2 4e-11 >seq20592 Length=348 Score = 122 bits (134), Expect = 2e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||||||||||||||| || || ||||| ||||| || ||||| || ||||| | Sbjct 15 CGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGGATACCTTCCT 74 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || ||| || ||||| || |||||||| | || || |||| |||| Sbjct 75 TGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAACGTCTAAGGTAA 134 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||||||||||| | |||||||| ||| || | ||| || Sbjct 135 TAGTTTTACCAGTGAGTGTTTTAACGAAGATTTACATGTT 174 >seq7630 Length=872 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||||||||| | || || || | |||| ||| || || || ||||| Sbjct 495 ATACCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCG 554 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || |||| || | ||| || |||||||| || | |||||||||||| ||| Sbjct 555 CTGAGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGT 614 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| || || || ||||| || || || || | || Sbjct 615 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCA 674 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || || | || ||||| || || || | || |||| ||| || ||||| || || Sbjct 675 ACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTTGTT 730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904850667190200