Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13822 109 2e-18 seq9607 93.3 1e-13 seq7307 86.0 2e-11 >seq13822 Length=3110 Score = 109 bits (120), Expect = 2e-18 Identities = 191/278 (69%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || ||||| |||||||||| || || || ||||| || | | |||| |||| ||| Sbjct 1410 CTCTTTTTTGCAACAGCATCGATCTCATCGATGAAGATAATTGAGGGAGCCTTTTCTCTG 1469 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | ||| | |||||||| | || ||||| | || || |||| || || || Sbjct 1470 GCCTTCTTAAAGAGGTCTCTTACTCTAGAGGCTCCTACTCCGACGAACATCTCCACGAAG 1529 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| | |||| | || ||| | || || || |||||||||||| | || ||| Sbjct 1530 TCTGAACCTGATATTGAAAGGAAAGGCACTCCAGCCTCACCTGCTACTGCCTTTGCGAGA 1589 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 || ||||| |||||||||||||| || | | ||| |||| |||| | || || ||| Sbjct 1590 AGCGTCTTTCCTGTTCCAGGTGGACCTACAAGCAGAGCTCCTCTTGGAATTTAAGCTCCA 1649 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTAC 289298 || |||||||| ||| |||||| || || || Sbjct 1650 AGCTTCTGATATTTCTTTGGGTCCTTTAAGAAGTCGAC 1687 >seq9607 Length=5752 Score = 93.3 bits (102), Expect = 1e-13 Identities = 257/389 (66%), Gaps = 10/389 (3%) Strand=Plus/Minus Query 302494 ATTCCGTCATCGCCGTAGGAAT--ACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCA 302551 |||||||| || || || ||| |||| | ||||| | ||| | |||| || || Sbjct 2972 ATTCCGTCCTCTCCATA--AATGAACTGCACGATTTACTCTTTGGAAGTTCTGACAGTTC 2915 Query 302552 TATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 |||||| | ||| | |||||||| || || || | | ||||| || || | Sbjct 2914 CATCATACTTCACCATCACATCTTCCATTGCTTTAATCAATCTTCTTTGAATGTAGCCTG 2855 Query 302612 TTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGA 302671 | | || || || || |||||||| || || | | || |||||||| ||||||| Sbjct 2854 TCTCTGCAGTCTTAACTGCAGTATCAATAAGTCCCTCTCTTCCTCCCATAGCGTGGAAGA 2795 Query 302672 ATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | | ||||| || || ||| | | || || |||||||||| || |||| Sbjct 2794 AAAACTCTTGAGGAGTTAATCCCTTCAGATAGCAGTTCTCAACGAATCCTTTGCTTTCGG 2735 Query 302732 G--CGAA-TCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788 | |||| || || ||| | ||||| ||||| | || | | |||| |||| | Sbjct 2734 GGCCGAAATCATC---CTTTGCGAAGTGAGGCAGAGATCTTCTGTGGAAGCCAAATGGAA 2678 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAAT 302848 |||||||||| |||||||| ||||| |||| ||| | || ||||| ||||| || | | Sbjct 2677 TACGCTTTCCTTCAACGTTTTGCTGACCCACGCAAGCCATAATCTGAGAAATGTTGAGGT 2618 Query 302849 CACTGCCCTTGGAGCCAGCATTTACCATA 302877 | || || ||||| || | |||||| Sbjct 2617 TAGATCCTTTAGAGCCTGCGTAAACCATA 2589 >seq7307 Length=3778 Score = 86.0 bits (94), Expect = 2e-11 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 252530 TATCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCAC 252589 ||||||| || | | |||||| || || | ||| | || | ||||||||||||| Sbjct 1354 TATCCATTCTCATCTAATAATTGCTAGTGTAAACACCCATTGCTTATTTTCCCATAGCAC 1413 Query 252590 TCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA- 252648 |||| ||||||||||| ||||| | ||| | || |||||||||||| || || ||| Sbjct 1414 TCTGATAAGTATTTCTTGGAGATTAATTATGGTCAGGGAAAGGAATG-ATACTGGCACAT 1472 Query 252649 ACACCGAAGATAGTGCTTGGGTGAATTTCACAGTGACTGTA 252689 || || || || | |||||| ||||| || ||| |||| Sbjct 1473 ACTCCTAAAATCATTGATGGGTGGATTTCGCAATGAGTGTA 1513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471342028596803