Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12789 132 6e-25 >seq12789 Length=2278 Score = 132 bits (146), Expect = 6e-25 Identities = 225/325 (69%), Gaps = 1/325 (0%) Strand=Plus/Plus Query 868685 ACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 868744 |||| ||||| |||||| || || ||| |||||| |||||||||||||| || Sbjct 472 ACGTTAGCCTTTTGGTACTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGTTAGG 531 Query 868745 GAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGC 868804 || |||| |||||||| ||| ||||| || ||||| || | |||||| Sbjct 532 GAAATCATGTCCATCCATTCGAAGGGGTTTTCAACCTGGTAGTATTTAGGGACTCCGAGG 591 Query 868805 GACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATG 868864 | ||| |||||||| || || ||| ||| ||||| | |||||| || |||||| Sbjct 592 GCGAAGAGGAGGCGGTCTGCCACGAACATGATATACTGACTCATGAGCTTGGAGTTCATT 651 Query 868865 CCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 ||||||||| |||| || || ||||||| ||| ||||| |||||| | || || | | Sbjct 652 CCGATGAGCTCCACTGGGAGAGACTCGCACACGAACTCGAGCTCGATGGCAACTGCGTTG 711 Query 868925 ACGATGATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGG 868984 |||||||| || ||| ||| ||||||| || | ||||||| ||| Sbjct 712 GTGATGATCTCGATGATGCGTTCGTTTGAGATCTTGTTGTTGATGTGCTTGTAGAGGAGG 771 Query 868985 CAGGCAAAGTCGCAGTGCA-ACCCT 869008 || || |||||| ||||| ||||| Sbjct 772 CAAGCGAAGTCGGTGTGCATACCCT 796 Score = 116 bits (128), Expect = 5e-20 Identities = 192/273 (70%), Gaps = 12/273 (4%) Strand=Plus/Plus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| |||||| |||| ||||||||||||||||| || ||||||||||| ||||| Sbjct 807 GATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGAT 866 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 || ||||||| ||| ||||| ||||||||||| || || || ||| | | || | ||| Sbjct 867 GGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTC 926 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCT 869373 ||| |||| | | || | ||||||||| | ||||| || ||||| || | Sbjct 927 GGCGAAGGCGCTGTGG------TCGTTGATCCAGCGGAGAGCCCAATCAGCCTTCTTAGT 980 Query 869374 CACCGACGGCACCGTGT-CGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGA 869432 | |||||| || | | | || |||||| || || || ||||| ||| Sbjct 981 GA-CGACGGGGATGTTTGCAGTAGCCTTGAAGAGGAACTCTTTCTCATGAGGGTC--TGA 1037 Query 869433 CAT--AGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || ||| ||||||||||| || |||||||| Sbjct 1038 GATGAGGGTATCGATCAGGAGTGAGTAGGTCTC 1070 Score = 87.8 bits (96), Expect = 2e-11 Identities = 199/297 (67%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || || ||||| || || ||| | |||| | ||| || Sbjct 1072 GAGTGGATGTTCTCCATCATCATTTGGAAACCATAGAAGCAGCGAGCCTCGGGCACCTGA 1131 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | ||| | |||| ||| ||||||||| ||||| |||||| ||| ||||| Sbjct 1132 ATCTCAGTGCAGAACTTCTGGGCGAGGTTCTCGTTGACGATACCGTCGGAGGCAGCGAAG 1191 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||||||| |||||| |||| ||| | || | |||||| Sbjct 1192 AAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGTTGTCATTAAGGCGCTCCCAGTCCTTA 1251 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCC-TCGGCCTTTTTGTA 869871 |||| | |||||| | ||||| | ||||||| | ||| || | | ||||| Sbjct 1252 ACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCAGAATGCAGCCATCTGG-TCCTTGTA 1310 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||| | ||| | | | ||| ||| |||| || |||||||||||| ||||| || Sbjct 1311 CATTTTCCAGATGTCGTTGTACTTGATGGGGAGGATGACAAAGCGGTTAGGGTTTTC 1367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105069610759423