Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq12789 145 1e-28 seq15473 111 2e-18 seq15472 111 2e-18 seq10703 104 4e-16 seq8719 102 1e-15 seq4373 100 5e-15 >seq12789 Length=2278 Score = 145 bits (160), Expect = 1e-28 Identities = 221/315 (70%), Gaps = 10/315 (3%) Strand=Plus/Plus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 |||||| |||||| ||| ||||||||||||||||| || ||||||||||| ||||| Sbjct 807 GATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGAT 866 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 || |||||| ||| ||||| ||||||||||| || || || ||| | || || | ||| Sbjct 867 GGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTC 926 Query 794475 GGCAAAAGTGTCCAGGCCCTCT--TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTC 794532 ||| | |||| || | | ||||||||| | ||||| || ||||| || Sbjct 927 GGCGA--------AGGCGCTGTGGTCGTTGATCCAGCGGAGAGCCCAATCAGCCTTCTTA 978 Query 794533 CTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTG 794592 | || ||| | | | | || |||||| || ||||| ||||| | Sbjct 979 GTGACGACGGGGATGTTTGCAGTAGCCTTGAAGAGGAACTCTTTCTCATGAGGGTCTGAG 1038 Query 794593 ACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGG 794652 | | ||| ||||| ||||| ||||||||||| ||||||||||| || || || ||| Sbjct 1039 ATGAGGGTATCGATCAGGAGTGAGTAGGTCTCGGAGTGGATGTTCTCCATCATCATTTGG 1098 Query 794653 AAGCCATAAAAGCAG 794667 || ||||| |||||| Sbjct 1099 AAACCATAGAAGCAG 1113 Score = 113 bits (124), Expect = 7e-19 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || ||| |||||| |||||||||||||| || || |||| |||||| Sbjct 487 TACTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGTTAGGGAAATCATGTCCATC 546 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCA-AGCAGGCG 794026 || ||| ||||| | | |||||| || | ||||| | || | || ||||| Sbjct 547 CATTCGAAGGGGTTTTCAACCTGGTAGTATTTAGGGACTCCGAG-GGCGAAGAGGAGGCG 605 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCAC 794086 ||| || ||||| || ||||| | |||||| || |||||| ||||||||| |||| Sbjct 606 GTCTGCCACGAACATGATATACTGACTCATGAGCTTGGAGTTCATTCCGATGAGCTCCAC 665 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 || || ||||||| || ||||| |||||| | || || | | ||||||||| Sbjct 666 TGGGAGAGACTCGCACACGAACTCGAGCTCGATGGCAACTGCGTTGGTGATGATCT 721 >seq15473 Length=4787 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| ||||| ||| | | Sbjct 2284 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGTTCACCGGGGA 2343 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||||||||| |||| ||| | || || |||| |||||| | Sbjct 2344 GGAGGAGTCTCACGGCGGTTTGGACCTCTCTGGATGAGAGAGTGTGCTTCTTGTTGTATC 2403 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || | ||||||| | |||| |||| || || | || ||||||| Sbjct 2404 TGACGAGCTTGGAGGCCTCGAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 2463 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || |||||||| || |||||||| || ||| Sbjct 2464 TGATGTGCATGGATCTCTTGGAGATTCCAGTCTCGGGGTGGACTTGCTTGAGGACTCTGT 2523 Query 1485710 A 1485710 | Sbjct 2524 A 2524 >seq15472 Length=4744 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| ||||| ||| | | Sbjct 2284 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGTTCACCGGGGA 2343 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||||||||| |||| ||| | || || |||| |||||| | Sbjct 2344 GGAGGAGTCTCACGGCGGTTTGGACCTCTCTGGATGAGAGAGTGTGCTTCTTGTTGTATC 2403 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || | ||||||| | |||| |||| || || | || ||||||| Sbjct 2404 TGACGAGCTTGGAGGCCTCGAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 2463 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || |||||||| || |||||||| || ||| Sbjct 2464 TGATGTGCATGGATCTCTTGGAGATTCCAGTCTCGGGGTGGACTTGCTTGAGGACTCTGT 2523 Query 1485710 A 1485710 | Sbjct 2524 A 2524 >seq10703 Length=2864 Score = 104 bits (114), Expect = 4e-16 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| |||| || || || | | Sbjct 2504 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCACCTGGGAG 2445 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 || || | ||||||||| |||| ||| | || || |||| |||||| | Sbjct 2444 GAGGAGTCTCACGGCGGTTTGGACCTCTCTGGATGAGAGAGTGTGCTTCTTGTTGTATCT 2385 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 | || | ||||||| | |||| |||| ||||| | || |||||||| Sbjct 2384 AACAAGCTTGGAGGCCTCGAGGGCGATCTTCTCGAAGATGTCACCAATGAAGGAGTTCAT 2325 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| ||| ||| | |||||||| || |||||||| || |||||||| || |||| Sbjct 2324 GATGTGCATGGATCTCTTGGAGATTCCAGTCTCGGGGTGGACTTGCTTGAGAACTCTGTA 2265 >seq8719 Length=2887 Score = 102 bits (112), Expect = 1e-15 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| ||||| ||| | | Sbjct 604 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGTTCACCGGGGA 545 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||| ||||| |||| ||| | || || |||| |||||| | Sbjct 544 GGAGGAGTCTCACTGCGGTTTGGACCTCTCTGGATGAGAGAGTGTGCTTCTTGTTGTATC 485 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || | |||||| | |||| |||| || || | || ||||||| Sbjct 484 TGACGAGCTTGGAGGCCTCAAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 425 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || |||||||| || |||||||| || ||| Sbjct 424 TGATGTGCATGGATCTCTTGGAGATTCCAGTCTCGGGGTGGACTTGCTTGAGGACTCTGT 365 Query 1485710 A 1485710 | Sbjct 364 A 364 >seq4373 Length=958 Score = 100 bits (110), Expect = 5e-15 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| |||| || || || | | Sbjct 605 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCACCTGGGAG 546 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 || || | ||||||||| |||| ||| | || || |||| |||||| | Sbjct 545 GAGGAGTCTCACGGCGGTTTGGACCTCTCTGGATGAGAGAGTGTGCTTCTTGTTGTATCT 486 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 | || | |||||| | |||| |||| ||||| | || |||||||| Sbjct 485 AACAAGCTTGGAGGCCTCAAGGGCGATCTTCTCGAAGATGTCACCAATGAAGGAGTTCAT 426 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| ||| ||| | |||||||| || |||||||| || |||||||| || |||| Sbjct 425 GATGTGCATGGATCTCTTGGAGATTCCAGTCTCGGGGTGGACTTGCTTGAGGACTCTGTA 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913563739946141