Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18359 120 2e-22 seq7630 109 4e-19 >seq18359 Length=859 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || || || || |||| |||| ||| ||||||||||||||| ||||| Sbjct 553 TTCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGC 612 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | | | || || ||||||||||||||||| ||||||| || || || | | Sbjct 613 TTAAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTG 672 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | ||||| |||||| | || | ||| | ||| | Sbjct 673 GGATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAA 732 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || ||||||||||| ||||||||||| || || || ||||| Sbjct 733 CGTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||| ||||| | || |||||| |||||||||||||| || | | || Sbjct 339 CTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCA 398 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || | ||||||||| ||||| |||| || || || | || | ||||| ||| Sbjct 399 TCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTG 458 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTA 34940 || | || || ||| || || || || | || || ||||| || | || | Sbjct 459 TCTTGGATCTTGGCTTTCAC--ATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGA 516 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||||||| ||||| ||||||||||| || ||||| Sbjct 517 TTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCAT 553 >seq7630 Length=872 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||||||||| ||| | ||| ||||||||||||||| ||||| || || | | | Sbjct 282 CTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTTCCG 341 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| || |||||||| |||| ||| || || | || | || |||||| Sbjct 342 TCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTCCTTG 401 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || ||| | || | || || ||| ||||||| || ||| Sbjct 402 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAACATCAAGAGTGATG 461 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| || ||||| ||||| Sbjct 462 GTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 496 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || | || || |||| ||||| ||| ||||||||| ||||| || || Sbjct 498 CCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 557 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | | || || |||||||| || || ||||| |||| || ||||| | || Sbjct 558 AGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGG 617 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || ||||| || || || | || | ||| | Sbjct 618 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCGGATGGCTCAA 675 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| ||||||||||| || |||||||| || ||||| |||||| Sbjct 676 CGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATG 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325592696180561