Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq18359 102 1e-16 seq20592 95.1 2e-14 >seq18359 Length=859 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || |||||| | || || || | | Sbjct 780 TGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCTG 721 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || || |||||| || || || ||||| ||||||||||||| Sbjct 720 ACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAAC 661 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| ||||| || || || ||| | || || ||||| |||| || || || | Sbjct 660 AGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAACA 601 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | ||||||||||||| Sbjct 600 TTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGAGGAGG 555 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || | || ||||| ||||| || | || || |||| || Sbjct 552 TGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTCCG 493 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| || || ||| ||||| || || ||||||||||||| Sbjct 492 ACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAAC 433 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || | | || ||| |||||| | | || ||||| | Sbjct 432 AGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAACA 373 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||| || || ||| |||| |||| | || | ||||| ||| Sbjct 372 TTCAAAAGGAGTCTACTCTCCACCTAGTCCTCAGACTCAGAGGTGGT 326 >seq20592 Length=348 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 || |||| ||| | |||||| | || || ||||| ||||| | || || || | || | Sbjct 170 TGTAAATCTTCGTTAAAACACTCACTGGTAAAACTATTACCTTAGACGTTGAGCCATCA- 112 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||| || ||| || ||| || ||||| || |||||||||||| Sbjct 111 GATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 52 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAAC 146194 |||||| | || || || ||||||||||| || || |||||| Sbjct 51 CAAAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGTAGAAC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785918570869480