Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq18359 91.5 1e-13 seq20592 87.8 1e-12 >seq18359 Length=859 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | || ||||||||||| ||||| || || |||||||| || || Sbjct 554 TCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCT 613 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| | || || ||||| || || || | |||| ||| || ||||| || || Sbjct 614 TAAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGG 673 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || | ||| ||||| | || | |||||||| | || || Sbjct 674 GATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAAC 733 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || || || | ||| || || || || ||||| Sbjct 734 GTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq20592 Length=348 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| ||||| | ||||||||||| ||||| || || ||||| || ||| Sbjct 17 TCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGGATACCTTCCTTG 76 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || |||||| |||| | || || || | || || || | || ||| Sbjct 77 TCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAACGTCTAAGGTAATA 136 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| ||||| | |||||||| || || | ||| || Sbjct 137 GTTTTACCAGTGAGTGTTTTAACGAAGATTTACATGTT 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385100800350879