Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq24161 120 2e-21 seq7307 89.7 4e-12 >seq24161 Length=681 Score = 120 bits (132), Expect = 2e-21 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || ||||| | || || || ||||| |||||||| || || || | ||| Sbjct 664 TTTTTGTCGAGACCGAAAGCCAATGCCGCAGCTGTTGGTTCGTTGATGATGCGTTTTACA 605 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | | |||||| || | ||||||||||| || ||||| | ||||| ||||||||| || Sbjct 604 TCCAAACCAGCGATACGACCTGCATCTTTGGTTGCTTGACGTTGTGCATCGTTAAAGTAA 545 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || |||||||||||||| || ||||| ||||||| || | || | || |||| Sbjct 544 GCTGGAACAGTAATAACCGCTTCTGTGACTTCTTCACCGAGGTAGTCCTCAGCAGTTTTC 485 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 |||||||| | |||| || ||||||||| ||| | ||| |||| Sbjct 484 TTCATTTTGCGCAAAACTTCTGCGGAAATTTGTGGTGGCGCCAATTTCTTG 434 >seq7307 Length=3778 Score = 89.7 bits (98), Expect = 4e-12 Identities = 203/298 (68%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 68851 CTTGTCGCCTACCATTTGTTTCAATCTCTGATAATATGTCGGACCAATAAAAATTTTAAC 68910 ||| || |||||||| || |||||||| ||||| | || || || | ||||| ||| Sbjct 431 CTTATCTCCTACCATGTGCTTCAATCTTTGATAGAAAGTTGGGCCCAGGAAAATCATAAA 490 Query 68911 TGGTAATTTTTTACCATTCATTCCATTATACATAGTTTCATTACCCCATTCTTCATAACC 68970 | || || || ||| | | |||||||||||| || ||||| || | || |||||| Sbjct 491 TTCAAACTTCTTTCCAGTAAATCCATTATACATTGTCTCATTTCCATACCTTTAATAACC 550 Query 68971 -AGC-AG-CAACTAATTCATCGTTAATGGCAT-TAAGATCAACACTTGTAAATGGTGTTG 69026 ||| || || ||||||| | || ||| || | || | || | || || |||| Sbjct 551 GAGCTAGTGAAGTAATTCAGAG---ATATCATCTACGCTCTA-ACCACTGAAAGGAGTTG 606 Query 69027 CATCGCCATACACTCCTTTAACTGCACATAGTTTTCCTAATAAACATTCAATAAGTTGCC 69086 |||| || | ||| || | ||| ||| ||| | |||||||||||||| | |||| Sbjct 607 CATCTCCTTCAGATCCATTCAAAGCAGATACTTTGCTCAATAAACATTCAATCAAATGCC 666 Query 69087 CAATAGTCATACGTTTGGGCATACAATTAGGATTGATAATAATATCGGGAATTAATCC 69144 |||| ||||| | || ||| | |||||| | || ||||| || | || ||| Sbjct 667 CAATGGTCATTCTAGAAGGGATAGCGTGAGGATTAACTATCATATCAGGCACTATTCC 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739392253675494