Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq23556 242 1e-58 >seq23556 Length=4305 Score = 242 bits (268), Expect = 1e-58 Identities = 612/925 (66%), Gaps = 28/925 (3%) Strand=Plus/Plus Query 188617 GAAATTGTTGAATTATTAGATAATCATATTATTGGACAAGAAAAAGCAAAACGTCAATTA 188676 |||||| |||||| | || | || | ||||| |||||||| || || || || Sbjct 1838 GAAATTACGGAATTACTTGACCAATATGTGATTGGTCAAGAAAAGGCTAAGCGAATTTTG 1897 Query 188677 GCTGTATCAGTTTATAATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaat 188736 || || | ||||| |||||||| |||||| |||| | | | || || Sbjct 1898 GCGGTCGCTGTTTACAATCATTACAAGCGCCTTAAGCATTTGGGT---------AAGAAG 1948 Query 188737 gatgatggagtaaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGT 188796 ||||||| | || | | |||| | ||| | | |||||||| || || ||||| ||| Sbjct 1949 GATGATGTTG-AACTAGCTAAAAGT--AATATCTTATTAGTTGGGCCAACAGGTTCTGGT 2005 Query 188797 AAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGAT 188856 ||||| || | || ||||||||||| |||| | ||||||| | | ||| ||||| Sbjct 2006 AAAACTTTGCTAGCGCAAACATTGGCACGTATGCTGAATGTACCCTTTGTAATCGCTGAT 2065 Query 188857 GCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGT 188916 || || |||| || |||||||| || || || ||||| || || || |||| | | Sbjct 2066 GCGACCACTTTGACTGAAGCTGGATACGTTGGCGAAGACGTCGAGAA--TATTATTCAGA 2123 Query 188917 --TTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCG 188974 || | ||| | ||||||| | || || || || || || ||||||| Sbjct 2124 AGTTGCTGCAAAATTGTAATTACGAAGTTGAGCGCGCACAAAAAGGCATCGTGTATATCG 2183 Query 188975 ATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTG 189034 ||||| | |||||||| | | ||| |||||| | | || || || || || || |||| Sbjct 2184 ATGAAATCGATAAAATCTCACGTAAAGCAGAAAACCCGTCAATCACTCGTGACGTTTCTG 2243 Query 189035 GCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTC 189094 | ||||| || || |||||||| | ||| | |||||||| ||| | || ||||||| Sbjct 2244 GTGAAGGCGTGCAACAAGCTTTGCTGAAATTGATTGAAGGCACAATGGCATCCGTTCCTC 2303 Query 189095 CTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCT 189154 | |||||||| ||||| || ||| ||||||| | || |||| || |||||||||||| Sbjct 2304 CACAAGGTGGACGTAAGCATCCTAACCAAGACTTCATTCAAATCGACACAACTAATATCA 2363 Query 189155 TGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTATCAAGAGACGCGCTACAA 189214 |||||||| |||||| || ||||||||| | | || ||||| ||| || || Sbjct 2364 TGTTTATTTGTGGTGGTGCATTTGATGGTTTGGCGAAAATTATTTCTGATCGCTCTGAAA 2423 Query 189215 AATCAACTTTAGGTTTTGATGATAGTGT--AGATAAAGTACAAGAAGAAATCAAGGATGA 189272 || | | || || | | ||||| ||| || | |||||| || Sbjct 2424 AAGGTGGTATTGGATTCGGGGCGAGTGTTAAGAGCGAGAGCCAGAAGA--------GTGC 2475 Query 189273 CAATAAAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGA 189332 | |||| | || | ||||||||| | |||||| || | |||||||| Sbjct 2476 TAGCGAAGTGATTTTGGATGCAGAGCCGCAAGATTTAATTAAGTTCGGCATTATTCCAGA 2535 Query 189333 ATTTATTGGGCGTGTACCAGTAATCGCAACTCTTAACAAACTTGATCGAGATGCATTGAT 189392 ||| | |||||| | || || || || || | | |||| ||| | |||||||| Sbjct 2536 ATTGGTCGGGCGTTTGCCTGTTATTGCGACCTTGATGGAACTGGATGAGGCGGCATTGAT 2595 Query 189393 TAACATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATAT 189452 | | ||||| ||||||| |||| || | || || |||||| ||| | | || || Sbjct 2596 TCAGATTTTGGTTGAGCCGAAAAATGCCTTGATCAAGCAATATGCAAAACTACTTGAAAT 2655 Query 189453 GGATGGCGTGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAA-GCGA 189511 ||| ||| || || ||| | | | ||| ||| || ||||||| || ||| || | Sbjct 2656 GGAAGGCTGTGAGTTGGAAATTCGTCCATCAGCTTTACAAGCAATTGC-GAAGAAGGCTA 2714 Query 189512 TTGAACGTAATACTGGTGCTCGCGG 189536 | | ||||| |||||||| || || Sbjct 2715 TCGCCCGTAAAACTGGTGCGCGTGG 2739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591396024398912