Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7629 150 4e-31 seq18359 149 1e-30 seq7630 147 4e-30 seq20592 116 7e-21 seq18358 87.8 4e-12 >seq7629 Length=3052 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || || || || || || || || |||||||| | ||||||||||| Sbjct 2737 AGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGACAAGGTTCTACCGTCT 2796 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | | |||||||||||||| ||||| |||||||| ||||| || |||||||| || Sbjct 2797 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGGATACCTTCCTTGTCC 2856 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| || || || ||||| || || || ||| || || || | || || ||| Sbjct 2857 TGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACATCAAGGGTGATAGTC 2916 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || || ||||| ||||| || || |||| |||| || Sbjct 2917 TTACCAGTCAAAGTCTTGACGAAGATCTACATTTTT 2952 >seq18359 Length=859 Score = 149 bits (164), Expect = 1e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82577 TCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATA 82636 |||| ||| ||||| | | || |||| ||| |||||||| || || || || ||||| Sbjct 320 TCACTGACCACCTCTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATA 379 Query 82637 ATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATC 82696 || ||| ||||||| ||||| || | ||||| |||||||| ||||| |||||||| Sbjct 380 GTCGCTGAGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATC 439 Query 82697 TGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG 82756 || || ||||| || || ||||| ||||| ||||| ||||| || || || || || Sbjct 440 GGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGG 499 Query 82757 TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| || || | || || ||||| || || | ||||||||||| || |||||| Sbjct 500 TTCGACGTCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 >seq7630 Length=872 Score = 147 bits (162), Expect = 4e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 82577 TCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATA 82636 |||| ||| ||||| | | ||| || ||||| || || || || ||||| || || || Sbjct 263 TCACTGACCACCTCTGAGTCTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTA 322 Query 82637 ATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATC 82696 ||||| ||| |||| |||||||| || || || || || ||||| |||||||||||||| Sbjct 323 GTCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATC 382 Query 82697 TGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG 82756 || || || |||||||| || || ||||| || || || || || || ||||| || Sbjct 383 GGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGG 442 Query 82757 TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | ||| || |||||||| || | ||||| || || || ||||| Sbjct 443 CTCAACATCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 496 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | || || ||||| || ||||| || ||||| || || ||||| Sbjct 496 TACCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGC 555 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || |||| |||||||| ||||| || ||||||||||| ||||| ||||| || || | Sbjct 556 TGAGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTG 615 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||| ||||| || || ||||| || || || || || || | Sbjct 616 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAA 675 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||| || || | ||||| || || || ||||| Sbjct 676 CGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 724 >seq20592 Length=348 Score = 116 bits (128), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 82648 TTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 ||||||||||||| | |||||| ||||| ||||| | |||||||||||| || || || | Sbjct 9 TTCTACCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGGATAC 68 Query 82708 CTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCA 82767 ||||||| ||||| ||||| || || |||||||| || ||||| || || || || | Sbjct 69 CTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAACGTCTA 128 Query 82768 AAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 | || || || || || || | || || || || || | ||| || | |||| Sbjct 129 AGGTAATAGTTTTACCAGTGAGTGTTTTAACGAAGATTTACATGTTTGTTTTTT 182 >seq18358 Length=408 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || |||||||| || || ||||| ||||| || || || || |||||||| || |||||| Sbjct 405 TGCTTTCCAGCGAAAATGAGTCTCTGTTGGTCAGGTGGGATACCTTCCTTGTCCTGAATC 346 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || || ||||||||||| || ||| || || || || | || || ||||| || Sbjct 345 TTGGCCTTGACATTTTCAATGGTGTCAGATGGCTCAACATCGAGGGTGATGGTCTTTCCA 286 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || | ||| Sbjct 285 GTGAGGGTTTTGACGAAAATTTACAT 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981509953529241