Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18358 98.7 1e-15 seq12789 91.5 1e-13 seq7630 87.8 2e-12 seq7629 87.8 2e-12 >seq18358 Length=408 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| ||||||| | ||| ||||| || ||||| ||||||||||| || Sbjct 406 CTGCTTTCCAGCGAAAATGAGTCTCTGTTGGTCAGGTGGGATACCTTCCTTGTCCTGAAT 347 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | ||||| || |||| ||||| ||| || || Sbjct 346 CTTGGCCTTGACATTTTCAATGGTGTCAGATGGCTCAACATCGAGGGTGATGGTCTTTCC 287 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| | ||| Sbjct 286 AGTGAGGGTTTTGACGAAAATTTACAT 260 >seq12789 Length=2278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 120610 ATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCG 120669 ||||||| | |||| || | |||| ||||| || ||||| ||||||| ||||| Sbjct 742 ATCTTGTTGTTGATGTGCTT---GTAGAGGAGGCAAGCGAAGTCGGTGTGCATACCCTCA 798 Query 120670 TCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATG 120729 || || || |||| ||||||| || |||||||||||||||| ||| |||||| Sbjct 799 TCACGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGAGC 858 Query 120730 TAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACC 120789 |||| |||| | || ||| || ||||| | ||||||||| || ||||| || Sbjct 859 CAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCAACA 918 Query 120790 ATGCGCTCGGCCAA 120803 | | |||||| || Sbjct 919 AGTCTCTCGGCGAA 932 >seq7630 Length=872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||||||||| ||| | || || | || || ||||| || || |||||||| Sbjct 341 GTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 400 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | | ||| | || || | |||||| || || | |||| Sbjct 401 GTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAACATCAAGAGTGAT 460 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||| || || || ||||| || ||||| Sbjct 461 GGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 496 >seq7629 Length=3052 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| || || || |||||||| || || ||| || | | Sbjct 2743 AAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGACAAGGTTCTACCGTCTTCCAAC 2802 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 | ||| || || | ||||| | ||| || || |||||||| ||||||||||| ||| Sbjct 2803 TACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGGATACCTTCCTTGTCCTGAATC 2862 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | ||||||| |||||||| || | ||||| || || || Sbjct 2863 TTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACATCAAGGGTGATAGTCTTACCA 2922 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || ||||| |||| ||| Sbjct 2923 GTCAAAGTCTTGACGAAGATCTACAT 2948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483268407635560