Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq8878 178 3e-39 >seq8878 Length=3384 Score = 178 bits (196), Expect = 3e-39 Identities = 323/470 (69%), Gaps = 7/470 (1%) Strand=Plus/Plus Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA- 110734 |||| |||||| |||| ||| | ||||||||||| || || |||| |||||| | || Sbjct 1487 TCAAATGGACTCCTTCCCATGCTCAGAGTCTTCAATGAGACAGCAAGATATGTAGACCAG 1546 Query 110735 --AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 |||||| |||||||| || || ||||| |||||||| ||||| ||||| | ||||| Sbjct 1547 GGAGGTGGAAAGAGAAAGGGTTCCTTTGCCATCTATCTTGAACCCTGGCACGCTGATATC 1606 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 ||||| | | || | | || ||||| || ||||| ||| |||| ||||| || Sbjct 1607 TTTGACTATCTCCAATTGAGAAAGAATCATGGTAAAGAAGAGCAACGAGCTCGTGACTTG 1666 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 || | | ||| || | ||||| |||||||| | || ||||| ||||| ||| Sbjct 1667 TTCATGGGTCTATGGGTTCCTGATTTGTTCATGAAGAGAGTCCAAGAGAATGGAGACTGG 1726 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 ||||| | ||||| || | ||||| | ||| || ||||| | ||||||||| Sbjct 1727 ACTCTTTTCTGTCCCAATGAAGCCAAGGGTCTTTATGACGTTTATGGCGATGAGTTTGAA 1786 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTT--TCGCAAACAAATTCCAGCTCAAG 111030 | || ||| |||| |||||| | |||| | || |||||| || |||||| Sbjct 1787 GCTCTCTACCAAAAGTATGAAGAGCAAGG--ACTTGGCCGCAAAACTATGAAGGCTCAAA 1844 Query 111031 AACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATA 111090 || | ||| || |||| | ||| |||||||||||| |||||| || | || | Sbjct 1845 AAGTCTGGGAGGCCATTATTGAGGCCCAAATTGAAACTGGAAATCCTTACATGCTCTACA 1904 Query 111091 AAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAG 111140 |||| || |||||||| ||||| | ||| | ||||| || ||| Sbjct 1905 AAGACCACGCCAATCGCAAGAGCAATCAGAAGAACCTTGGAACTATCAAG 1954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186429318902459