Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18359 109 1e-18 seq7630 98.7 2e-15 >seq18359 Length=859 Score = 109 bits (120), Expect = 1e-18 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || ||||| ||||| || ||||| | || || ||| || ||||| | Sbjct 545 TTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTCCGACACCAT 486 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| || ||| ||||| ||||| ||||| || || || |||| Sbjct 485 CGAGAATGTGAAAGCCAA-GATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGAGAC 427 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 ||||||| ||||||||| || | |||||||| || ||| | ||| || ||| | || | Sbjct 426 TTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAACATTCAAA 367 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 | ||||||||||| ||||| || | ||||| Sbjct 366 AGGAGTCTACTCTCCACCTAGTCCTCAGACT 336 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || || |||||||| || || |||||||| | || Sbjct 766 AAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCTGACACCATTGAGAAC 707 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || || || || || || || || ||||| || ||| Sbjct 706 GTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAACAGAGACTGATTTTC 647 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||| || || || || ||| |||||| | ||||| ||||| Sbjct 646 GCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAACATTCAGAAGGAGTCC 587 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 |||||||| | ||| | ||| Sbjct 586 ACTCTTCATTTGGTTCTCAGA 566 >seq7630 Length=872 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || |||||| | || || || || || || |||| Sbjct 482 CAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCTCAGATACCATCGAGAA 423 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||| ||| || || |||||||||||||| Sbjct 422 CGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAACAAAGACTTATCTT 363 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | ||||| ||||| ||| | | || |||||| | ||||| ||||| Sbjct 362 CGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAACATTCAGAAGGAGTC 303 Query 206364 TACTCTTCACCTTGTTTTGAGACT 206387 || || ||| | || ||||||| Sbjct 302 AACCCTCCACTTGGTCCTGAGACT 279 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||||| || | ||| || || ||||| ||||| | || ||||||| | ||| ||| Sbjct 279 AGTCTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTT 338 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||| |||||||| || ||||||||||| | ||||||| Sbjct 339 CCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGA 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181438931909699