Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq7630 116 3e-21 >seq7630 Length=872 Score = 116 bits (128), Expect = 3e-21 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 25162 TCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGA 25221 ||| | ||||||||||||| | || || || || | |||||||| | ||||| | || Sbjct 737 TCACTCAAACAACATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGA 678 Query 25222 AGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTA 25280 || || |||| | || || |||||| | || || || || || || ||||| | Sbjct 677 CGTTGA-GCCATCCGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAA 619 Query 25281 TACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATG 25340 | || ||||| || || |||||||| | | ||||| ||||| ||||| | |||| Sbjct 618 TCCCACCCGACCAACAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCC 559 Query 25341 TCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAG 25400 ||||||||||||| || || || || || ||| |||| || ||| | ||| | ||||||| Sbjct 558 TCAGCGATTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCAGACTTAGAGGAG 499 Query 25401 G 25401 | Sbjct 498 G 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444954089554080