Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12789 188 1e-41 >seq12789 Length=2278 Score = 188 bits (208), Expect = 1e-41 Identities = 392/570 (69%), Gaps = 24/570 (4%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||| || || || ||||| |||||||||||| | |||||||| ||| | Sbjct 1383 CGAGCCTCTTCTCGAGGAAAACCCTAACCGCTTTGTCATCCTCCCCATCAAGTACAACGA 1324 Query 1455775 GATATGGGAAATGTACCAAAAAGGCC-GAGGCCTCCTTT-TGGACCGCCGAGGAGGTCGA 1455832 || ||| |||||||| || | || || | || | || ||||| | ||||| |||| Sbjct 1323 CATCTGGAAAATGTAC---AAGGACCAGATGGCTGCATTCTGGACATCTGAGGAAATCGA 1267 Query 1455833 CCTCGGCGCCGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCAT 1455889 ||||| | |||| | || |||||| | || | ||| |||| || || | Sbjct 1266 CCTCGCCACCGATGTTAAGG---ACTGGGAGCGCCTTAATGACAACGAAAAGCACTTTGT 1210 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 ||||||||| |||||||| || ||| ||| ||| || ||||| ||||||||| ||| Sbjct 1209 CAAGCACGTGCTCGCCTTCTT-CGCTGCCTCCGACGGTATCGTCAACGAGAACCTCGCCC 1151 Query 1455950 -GCCGCTTTATGAAA-GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | | || || | ||| | || |||| ||||| || | || || || ||||| || Sbjct 1150 AGAAG--TTCTGCACTGAGATTCAGGTGCCCGAGGCTCGCTGCTTCTATGGTTTCCAAAT 1093 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| || |||||||| ||||||||||| ||| | || || Sbjct 1092 GATGATGGAGAACATCCACTCCGAGACCTACTCACTCCTGATCGATACCCTCATCTCAGA 1033 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCA-TCGACACGGTGCCGTCGGTGAGGAAAA 1456126 ||| ||||| || |||||| || | | | || ||||| || | || | Sbjct 1032 CCCTCATGAGAAAGAGTTCCTCTTCAAGGCTACTGCAAACATCCCCGTC-GTCACTAAGA 974 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||| || ||||| | ||||||||| | | || ||| |||||| | || Sbjct 973 AGGCTGATTGGGCTCTCCGCTGGATCAACGACCACAGC-----GCCTTCGCCGAGAGACT 919 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 || | ||| || || || ||||||||||| ||||| ||| ||||||| ||||||| || Sbjct 918 TGTTGCCTTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCTCTTTCTGCTCCATCTTCTG 859 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| || |||||||||||||| || Sbjct 858 GCTCAAGAAACGTGGCCTCATGCCCGGCCT 829 Score = 104 bits (114), Expect = 3e-16 Identities = 218/320 (68%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACC 1456507 ||| ||||| ||||| || || || ||||||| | || ||||||| || | | Sbjct 794 GGTATGCACACCGACTTCGCTTGCCTCCTCTACAAGCACATCAACAACAAGATCTCAAAC 735 Query 1456508 GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAG 1456567 || || |||||||| | | || || | |||||| ||||| || ||||| Sbjct 734 GAACGCATCATCGAGATCATCACCAACGCAGTTGCCATCGAGCTCGAGTTCGTGTGCGAG 675 Query 1456568 TCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATT 1456627 || || || |||| ||||||||| |||||| ||| ||||||| | ||||| || | | Sbjct 674 TCTCTCCCAGTGGAGCTCATCGGAATGAACTCCAA-GCTCATGAGTCAGTATATC-ATGT 617 Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAAC 1456687 | || || |||||||| ||| || ||||| | || |||||| | | ||| Sbjct 616 TCGTGGCAGACCGCCTCCTCTTCGCCCTCGGAGTCCCTAAAT-ACTACCAGGTTGAAAAC 558 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 || ||| ||||||||| |||| || || |||||||||||||| |||||| || Sbjct 557 CCCTTCGAATGGATGGACATGATTTCCCTAACTGGCAAGACCAACTTCTTCGAGAAGCGT 498 Query 1456748 G-TGGCGAGTACGCCAAGGC 1456766 | ||| |||||| ||||| Sbjct 497 GTTGGTGAGTACCAAAAGGC 478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175378781097478