Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq12789 91.5 5e-13 >seq12789 Length=2278 Score = 91.5 bits (100), Expect = 5e-13 Identities = 253/374 (68%), Gaps = 18/374 (5%) Strand=Plus/Minus Query 443506 CCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCT 443565 ||||||| |||| |||||| | |||||| ||||||||||| ||| ||||| || Sbjct 1123 CCGAGGCTCGCTGCTTCTATGGTTTCCAAATGATGATGGAGAACATCCACTCCGAGACCT 1064 Query 443566 ACAGTCAGT--TGATCAAGACACTAAT-TCCGAACG--AAGACGAACAGCGGTCCATCTT 443620 || ||| | ||||| | || || || || || | | || ||| || | ||| |||| Sbjct 1063 AC--TCACTCCTGATCGATACCCTCATCTCAGACCCTCATGA-GAA-AGAGTTCC-TCTT 1009 Query 443621 CTCATCGTTCATG--ACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGG 443678 | | | | || | || || | | ||||| | ||| || ||||| | ||| Sbjct 1008 C--AAGGCTACTGCAAACATCCCCGTCGTCACTAAGAAGGCTGATTGGGCTCTCCGCTGG 951 Query 443679 CTCGAACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGA 443738 || ||||| | | | | ||||| |||| |||| || || || || | || || || Sbjct 950 ATC-AACGACCACAGCGC--CTTCGCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAGGGC 894 Query 443739 CTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCA 443798 | || || |||| |||| ||||||||||||| | || || ||||| || |||| Sbjct 893 ATCTTCTTCTCCGGCT-CTTTCTGCTCCATCTTCTGGCTCAAGAAACGTGGCCTCATGCC 835 Query 443799 CGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGC 443858 ||| |||||||| ||||| ||||| || || |||||| |||| ||||||||| Sbjct 834 CGGCCTGACCTTCTCCAACGAGTTGATCTCCCGTGATGAGGGTATGCACACCGACTTCGC 775 Query 443859 CTGTCTTCTCTACA 443872 || || ||||||| Sbjct 774 TTGCCTCCTCTACA 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587822779353455