Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8878 172 7e-38 seq2561 131 2e-25 seq12789 107 2e-18 >seq8878 Length=3384 Score = 172 bits (190), Expect = 7e-38 Identities = 972/1528 (64%), Gaps = 70/1528 (5%) Strand=Plus/Minus Query 110657 ACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTT 110716 || ||||| ||| ||| || || || ||||| || |||||| ||||||||| Sbjct 2607 ACTAGGTGAGGGTTCACACAAACGAATTCTCCTGCTAGCACTCTTCTGGTGTAGATGTTG 2548 Query 110717 GTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGC 110776 |||||||| |||||||||| || ||||| || | |||||| | |||||| || || ||| Sbjct 2547 GTTGTGTAGGGTTCAAAGCTCTCGTTATTGCCGAGGATTTGAGAGGTGGAAGCAGTGGGC 2488 Query 110777 ATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA 110836 || ||||||| || ||| ||| | | || | || | || ||| || Sbjct 2487 ATGGGTGCCAATAAGAGAGAGTTTCTAGCTCCGTGCTGTACAACTTCTTGCTTTAGCTTT 2428 Query 110837 TCCCAGTCGTAGTTGAGCTTGGT----TTCACCTTCCCACATGTCAAACTGAAGCACCCC 110892 |||||||||| || ||| ||| | |||| | | ||||| || | | || Sbjct 2427 GCCCAGTCGTATCTGTTTGTGGGAGTCTTCTCGTTCCAA-AGATCAAATTGGAACTGGCC 2369 Query 110893 TTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA--GCCAATTCA 110950 ||| ||||| || | | | |||||| | |||| |||| ||||| ||| Sbjct 2368 TTGACTAAGAGGAGAGCCGGGATAACTCTCATAGTATCCTTC--CTTCTTTGCCAAGTCA 2311 Query 110951 CA---GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGA--TACGAGC---ATTCA 111002 || |||| | || | || ||||| || || ||||||| | | | || | Sbjct 2310 CATGAGCTC---TGCATAGCAGCATGATAAATTGTCTCAAAGACTTCCTGGTTAAATGTA 2254 Query 111003 T---CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 111059 | ||| || | || || ||| ||| | || ||| || | |||| || | Sbjct 2253 TAAGCTCTTTCG--TCCTC-GAAAGGAATTCTAAGAAGCATAAGAG-----CATCAGCCA 2202 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 111119 ||||||||| ||| | ||||| ||||| ||| |||||| || |||| || ||| Sbjct 2201 GACCTTGAATACCTATTCCAATGGGTCTATGTTTCATATTTGAGTTTCTGGCCTCATCAC 2142 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 ||||| || |||| |||||| | || ||| || || | || | | | | || Sbjct 2141 AAGGATAGAAGTTTCCGTCAATAATTCTGTTCAGGTTGATAGTGATCTGATAGGCAACTT 2082 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 ||| || ||||||| || ||| | | | ||| || || || | || Sbjct 2081 AATGTAGCTTTTCATGGTCGAAAACACCATTGG------TGATGTAGCGAGGGAGTGAGA 2028 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || | |||||| ||||| ||||||| | |||||||| | |||||| || Sbjct 2027 TACTGGCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAAC 1968 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | || |||||||| || || || | ||||| || || ||||| ||| | Sbjct 1967 AGAGATTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGGT 1908 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 | |||||||||||||| || | || || || | || | | | ||| |||| ||| | Sbjct 1907 CTTTGTAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGA 1848 Query 111420 CATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG 111477 | | || | || | ||| | | |||| | | | || |||||| |||||| Sbjct 1847 CTTTTTGAGCCTTCATAGTTTTGCG--GCCAAGTCCTTGCTCTTCATACTTTTGGTAGAG 1790 Query 111478 GGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC--TGG-TGCCTTGTCTGGACAGAA 111534 ||||||||||| || || |||| | ||||| ||| | | ||| |||||||| Sbjct 1789 AGCTTCAAACTCATCGCCATAAACGTCATAAAGACCCTTGGCTTCATTG---GGACAGAA 1733 Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG--G 111592 ||||| ||| | ||| || | || | ||||||||| | || |||| ||| || Sbjct 1732 AAGAGTCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACC 1673 Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 ||||| | || || | | || |||||| | ||| || || || || | || Sbjct 1672 CATGAACA-AG-TCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGA 1615 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC 111712 | || | |||||| |||||||| || |||||||||| || | || ||||||| Sbjct 1614 TAGTCAAAGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCTCTTT 1555 Query 111713 CCAGCT---TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 111769 ||| || || | |||||| | ||||| | || || || | ||||| |||| | Sbjct 1554 CCACCTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGT 1495 Query 111770 CCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT-TGGCTCTCACATCATGGAT 111828 |||| ||| | ||||| || ||| || || || | | ||||| | | | || Sbjct 1494 CCATTTGAGTATCCATTGGTACCCTTTAT-GTAGCTTCCTGTAGCTCTGATGTTGT-GAA 1437 Query 111829 GTGCA--TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 |||| ||| | | || ||||| | ||| || || | || | | | ||||| | Sbjct 1436 CTGCAAGTCCTACT-CCACCAGCACTCTTAGAAATGAGTGCTACGTTCTTGAGAGTATCG 1378 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA---CATCTGC 111943 |||||||||| ||| ||||| ||||| | || || ||| ||| ||| ||| || Sbjct 1377 TAGATACCGTGGATAGAGTCGTCCTTCAT---CATGAGCAAGAAACAGGAGCTCATTTGA 1321 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 112003 || | || |||||||| |||||||| || ||||| || ||| ||||| || | | | Sbjct 1320 GGCTTGGGGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTC 1261 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || || ||||| | | | || |||| |||||| |||||| || | || ||| Sbjct 1260 ATGAGGTTATAAGTCTCAATGGCTGAGTCAACATCTTCCTTGTGGATTCCTACTGAGACT 1201 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGC 112121 | | || ||||| ||| || |||| | || |||| | || | |||| | ||| Sbjct 1200 CTGAGGAGCATGTGCTGGGGTCTTTCAACGATCTTGCCGTTGA--CTTTGAGCAAGTAGG 1143 Query 112122 TCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||||||||| |||| || ||||| Sbjct 1142 AGCGCTCAAGGGTCTTGAATCCGAAGTA 1115 >seq2561 Length=3495 Score = 131 bits (144), Expect = 2e-25 Identities = 742/1160 (64%), Gaps = 45/1160 (4%) Strand=Plus/Plus Query 111042 AAATAAA-TACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100 || |||| | |||| || | ||||| ||||| | |||||||||||||| | ||| Sbjct 1437 AATTAAAGTGCATCGGCAAACCCTTGCACACCGATTCCAATAGGTCTGTGCTTAAGATTT 1496 Query 111101 GACTTTCGCGCAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 111157 || || || || |||| || ||||| |||| | || || | | |||||||| Sbjct 1497 GAGTTACGAGC---CTCAGCGACTGGATAGTAATTGTTATCTATAATTTTATTTAGATTC 1553 Query 111158 TTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAG--TGCGAGTCTCTT 111215 || || | |||| |||| | || ||||| ||||| || | ||| || ||| Sbjct 1554 TTAGTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTATTCTTGCTCCTC-CTT 1612 Query 111216 CATTGACATA-CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 111274 | ||||| | || | || | || || || || | |||||| ||||| | ||||| | Sbjct 1613 C-TTGACGAATCTATTGA-GAGCAATAGAGGCAAGATTGCACACAGCTATTTCATCAGGA 1670 Query 111275 TCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 111334 |||| |||||| || || || || | || || |||||||| || || | || | Sbjct 1671 CTTGTGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGTTCCTAGGTTTTAC 1730 Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 111394 | ||| ||| | ||||| ||||| |||||||||||||| || || || ||||| | Sbjct 1731 TAGTTGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGTTCCAGTCTCAATT 1790 Query 111395 TGTGATTTGAGAATAGCCTTCCAAA--CATCGGCGGCTGGTACAATGGCGTTG---GCCC 111449 || || | | || ||||| |||||| | || ||| | ||| | | Sbjct 1791 TGAGACTCTACTATCTGTCCCCAAAGCCATCGG-GCCT----TAATAGTCTTGCGACCGC 1845 Query 111450 GTCC-CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAG 111508 |||| | || || |||| |||||| |||||| || || ||| | | || | Sbjct 1846 GTCCAGTGCG-TTCATACTCCTCGTAGAGCTTTTCAAATTCTTCTCCCCAAGTGGTGGTG 1904 Query 111509 AGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTC 111568 || ||||| || || ||||| | |||| ||| | | | |||||| | | Sbjct 1905 AGGCCTGGGCACTCGTTGGGACACATGAGAGTCCAGTCTTCGTTGTGCTCAACTCTTCGC 1964 Query 111569 ATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCA 111628 ||||| | ||| |||||||| || | | || | || | | | | |||||| | | Sbjct 1965 ATGAACAAGTCAGGAATCCAGAGAGCGTAGAACAAGTCACGAGCTCTATTCTCTTCCTTA 2024 Query 111629 CCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAG 111688 || ||||| || | || ||||| || ||| || |||||||||||| | |||| Sbjct 2025 CCGTGGTTTTTACGCAGCTGGAGGAAGTCATAGATGTCACTGTGCCATGGCTCTACATAG 2084 Query 111689 ACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTT 111744 || |||| || || |||| | || ||| | |||| ||| || | || ||| | || Sbjct 2085 ACGGCGAAAGCACCTTTTCTTTTGCCG-CCACCCTGATCTACGTATCTTGCGGTGTCATT 2143 Query 111745 AAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGA 111804 || || |||||| ||||| | || | || | |||||||| || | ||| || Sbjct 2144 GAAGACCTTAAGCATAGGAATGAGTCCGTTGGAGTATCCATTTGTACCTCTGATATAGGA 2203 Query 111805 TTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTG 111864 | | ||||| | ||| || | | || || || ||||| ||| ||||| Sbjct 2204 GTCAGCAGCTCTGATATCTGAGACGGAAACACCGATGCCACCAGCAGCCTTAGAGATGAT 2263 Query 111865 CGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT----GTTGGCGA 111920 ||| | | |||||| | | || || | || ||||||||||| || || | Sbjct 2264 TGCAATTTGTTTCAGAGTTTCGAATATTCCATCTATGGAGTCCTCCTTGACAGTCAGCAA 2323 Query 111921 TAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTG 111980 ||| ||| |||| |||||| || | || || |||| ||||| || || || || | Sbjct 2324 GAAGCAAG-AACT---CATCTGAGGCTTGGGAGTTCCAGAGTTGAAAAGAGTGGGAGTGG 2379 Query 111981 CGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT 112039 ||||| |||| || | | | | ||| || |||||||| || | ||| | | ||| Sbjct 2380 CGTGAGTGAACCACAGC-TAGCTCATGAGATCATATGTCTCAAATGCTGAAGCTAAATCT 2438 Query 112040 TCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATG 112099 | | ||| || || || ||| | ||||| ||||| || || | |||| | | || Sbjct 2439 TGCTTGTGAATACCAATGCTGACTCTCATGAGCATGTGTTGAGGTCTCTCCAAAATGGTG 2498 Query 112100 CCATCGAGCCGTTGA-AGAT-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAAT 112157 | | | || || | || | ||||||| || | ||| ||| ||||||||| || | | Sbjct 2499 -GAACCATCCTTTAATAGGTAAGCTCTT-TCTAATGTTCTGAACCCAAAGTAATCATAGT 2556 Query 112158 CATAGTCCCGCTTCGTATCA 112177 ||||| || ||||| || Sbjct 2557 TGTAGTCACG-ATCGTAGCA 2575 >seq12789 Length=2278 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| | ||||||||| ||||| || | || || |||||| || || |||||||| || Sbjct 786 GTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCC 845 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||| | ||| | || | |||||| || |||||||||||||| ||||||||| Sbjct 846 ACGTTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGC 905 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 || || |||| ||| | |||||||||| || Sbjct 906 TGCGAAGGCAACAAGTCTCTCGGCGAAGGCGC 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627834020762400