Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8878 168 8e-37 seq2561 120 4e-22 seq12789 113 6e-20 >seq8878 Length=3384 Score = 168 bits (186), Expect = 8e-37 Identities = 558/856 (65%), Gaps = 19/856 (2%) Strand=Plus/Minus Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778 || ||||| ||||||| ||||||| | ||||||||| |||||||| || | Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA-TCCTT 118837 || |||||||| || || || | |||||| ||||| ||| | | | || || || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTT-GCGATTGGCGTGGTCTTT 1904 Query 118838 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 118897 ||| |||||||| || | || || || |||||| || | ||| |||| |||||| | Sbjct 1903 GTAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTT 1844 Query 118898 GGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTC 118957 ||| || ||| | | | | || | || || |||||| |||||| ||||| Sbjct 1843 TTGAGCCTTCATAGTTTTGCGGCCAAGTCCTTGCTCTTCATACTTTTGGTAGAGAGCTTC 1784 Query 118958 AAACTCTTCACCCACGGCCTCTGAGAG-CCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016 |||||| || || | || | || |||| | || | || || ||||| |||| || Sbjct 1783 AAACTCATCGCCATAAACGTCATAAAGACCCTTG-GCTTCATTGGGACAGAAAAGAGTCC 1725 Query 119017 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 119076 | | ||| ||| | || | ||||||||| | || || | ||| || || ||| | Sbjct 1724 AGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATGAACA 1665 Query 119077 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136 || ||| || ||||| | || ||||| | ||| | | | |||| | || Sbjct 1664 AGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCAAAGA 1605 Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC---GACGACCAGCCT 119193 |||| |||||||| ||||| || || | || | || ||||| | | ||| ||| Sbjct 1604 TATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCTCTTTCCACCTCCCT 1545 Query 119194 GGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATT 119253 ||| |||||| || || || | || || || | ||||| |||| || |||| || | Sbjct 1544 GGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTCCATTTGAGT 1485 Query 119254 GGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACATCGTGGATGTGC-ATAC 119310 ||||| || ||| || | ||| || ||||||| | || || ||| | | Sbjct 1484 ATCCATTGGTACCC--TTTATGTAGCTTCCTGTAGCTCTGATGTTGT-GAACTGCAAGTC 1428 Query 119311 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCAT 119370 | | || || || | ||| || || | || | | ||||| | ||||||| || | Sbjct 1427 CTACTCCACCAGCACTCTTAGAAATGAGTGCTACGTTCTTGAGAGTATCGTAGATACCGT 1368 Query 119371 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA---CATTTGAGGCCTGGGTG 119427 ||| ||||| |||| | ||||| ||| | | || |||||||||| |||| | Sbjct 1367 GGATAGAGTCGTCCTTCAT---CATGAGCAAGAAACAGGAGCTCATTTGAGGCTTGGGGG 1311 Query 119428 TACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGT 119487 ||||||||||||||||||| ||||| || || ||||| || | | ||| || | Sbjct 1310 TACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGAGGTTAT 1251 Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 | ||||| | | | | | || |||||| ||| || || | ||||| | | | || Sbjct 1250 AAGTCTCAATGGCTGAGTCAACATCTTCCTTGTGGATTCCTACTGAGACTCTGAGGAGCA 1191 Query 119548 TGTATTGGGGTGTTTC 119563 ||| |||||| |||| Sbjct 1190 TGTGCTGGGGTCTTTC 1175 >seq2561 Length=3495 Score = 120 bits (132), Expect = 4e-22 Identities = 680/1069 (64%), Gaps = 34/1069 (3%) Strand=Plus/Plus Query 118516 AAATAAA-TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 || |||| | |||| || | ||||| ||||||| ||||| || | || | | ||| Sbjct 1437 AATTAAAGTGCATCGGCAAACCCTTGCACACCGATTCCAATAGGTCTGTGCTTAAGATTT 1496 Query 118575 GACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 118634 || || ||||| | || ||||| |||| |||| |||| |||||||||| || Sbjct 1497 GAGTTACGAGCCTCAGCGACTGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTA 1556 Query 118635 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC--TGCGAGTCTCTTCAT 118692 |||| ||| |||| | || || || || || || | ||| || |||| | Sbjct 1557 GTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTATTCTTGCTCCTC-CTTC-T 1614 Query 118693 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 118752 |||| | || || || || || || ||||| ||||||| | ||||| | | Sbjct 1615 TGACGAATCTATTGAGAGCAATAGAGGCAAGATTGCACACAGCTATTTCATCAGGACTTG 1674 Query 118753 TGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 118812 || |||||| || || ||||| | || || ||||||||||| || | ||| | | | Sbjct 1675 TGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGTTCCTAGGTTTTACTAGT 1734 Query 118813 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 118872 | |||||| | || || ||||| ||||| |||||||| || || || ||||| |||| | Sbjct 1735 TGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGTTCCAGTCTCAATTTGAG 1794 Query 118873 ACTTGAGAATAGCCTTCC----AGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC-CC 118927 ||| | || | ||| || |||||| || | ||| | | | ||| | Sbjct 1795 ACT--CTACTATCTGTCCCCAAAGCCATCGG--GCCTTAATAGT--CTTGCGACCGCGTC 1848 Query 118928 CTCTTC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 | | | || |||| |||||| |||||| ||||| ||| | | ||| | Sbjct 1849 CAGTGCGTTCATACTCCTCGTAGAGCTTTTCAAATTCTTCTCCCCAAGTGGTGGTGAGGC 1908 Query 118987 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 119046 |||| || | || || | ||||| ||| | | | |||||| | ||||| Sbjct 1909 CTGGGCACTCGTTGGGACACATGAGAGTCCAGTCTTCGTTGTGCTCAACTCTTCGCATGA 1968 Query 119047 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 119106 | | ||| || |||||||| || |||| | || ||| | | ||||| | || | Sbjct 1969 ACAAGTCAGGAATCCAGAGAGCGTAGAACAAGTCACGAGCTCTATTCTCTTCCTTACCGT 2028 Query 119107 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 119166 | || ||||| || | ||||| ||| || |||||| || || | || || | Sbjct 2029 GGTTTTTACGCAGCTGGAGGAAGTCATAGATGTCACTGTGCCATGGCTCTACATAGACGG 2088 Query 119167 CGATTG-ACC---CCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 ||| | ||| ||| | || ||| |||| | ||| || || || ||| | || || Sbjct 2089 CGAAAGCACCTTTTCTTTTGCCG-CCACCCTGATCTACGTATCTTGCGGTGTCATTGAAG 2147 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTA 119282 || |||||| ||||||| || | ||| | |||||||| || | ||| || | | Sbjct 2148 ACCTTAAGCATAGGAATGAGTCCGTTGGAGTATCCATTTGTACCTCTGATATAGGAGTCA 2207 Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342 ||||||| ||| || | | ||| || || || || ||| |||| || | Sbjct 2208 GCAGCTCTGATATCTGAGACGGAAACACCGATGCCACCAGCAGCCTTAGAGA--TGATTG 2265 Query 119343 CACTCCG--TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 || | | | ||| | || | || ||||| || |||| ||| || | | || | Sbjct 2266 CAATTTGTTTCAGAGTTTCGAATATTCCATCTATGGAGT---CCTCCTTGACAGTCAGCA 2322 Query 119401 AGCAGCTCGA---CATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGT 119457 || ||| || ||| |||||| |||| || |||| |||||| ||||| || || |||| Sbjct 2323 AGAAGCAAGAACTCATCTGAGGCTTGGGAGTTCCAGAGTTGAAAAGAGTGGGAGTGGCGT 2382 Query 119458 GGATGAA-CATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 119516 | |||| || | | | | ||| || || ||||| || | | | | |||| | Sbjct 2383 GAGTGAACCACAGC-TAGCTCATGAGATCATATGTCTCAAATGCTGAAGCTAAATCTTGC 2441 Query 119517 CCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 119565 ||||||||| || ||| | ||| | ||||| ||| ||| | |||| Sbjct 2442 TTGTGAATACCAATGCTGACTCTCATGAGCATGTGTTGAGGTCTCTCCA 2490 >seq12789 Length=2278 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | |||||| ||||||||||| | || || |||||| ||| || |||||||| || Sbjct 786 GTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCC 845 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||| | |||||| || | || || ||||| ||||||||||| ||||||||| Sbjct 846 ACGTTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGC 905 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 130178 ||||| |||| || | ||| || |||| || Sbjct 906 TGCGAAGGCAACAAGTCTCTCGGCGAAGGCGC 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618240246033640