Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8878 185 1e-41 seq2561 156 5e-33 seq12789 107 2e-18 >seq8878 Length=3384 Score = 185 bits (204), Expect = 1e-41 Identities = 899/1414 (64%), Gaps = 42/1414 (3%) Strand=Plus/Plus Query 104263 GGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCA 104322 |||||| |||| || | | | ||||| || || ||| | | || ||||| ||| Sbjct 1222 GGAAGATGTTGACTCAGCCATTGAGACTTATAACCTCATGAGCGACCGTTGGTTCACTCA 1281 Query 104323 CGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATG---TCCAGTTGCTT 104379 || ||||| || |||||||| |||||||| || | || |||||| ||| ||| ||| Sbjct 1282 TGCTACACCCACTCTCTTCAACGCTGGTACCCCCAAGCCTCAAATGAGCTCCTGTTTCTT 1341 Query 104380 CCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC 104439 || || | ||||| ||||| ||| |||||||||| | ||||| | | | || Sbjct 1342 GCTCATG---ATGAAGGACGACTCTATCCACGGTATCTACGATACTCTCAAGAACGTAGC 1398 Query 104440 GCAAATCTCAAAGTGGGCTGGGGGTATTGGGA--TGCACATCCATGATGTGAGAGCCA-A 104496 | || || ||| | ||||| || | | ||| |||| || | | | ||||| | | Sbjct 1399 ACTCATTTCTAAGAGTGCTGGTGG-AGTAGGACTTGCAGTTC-ACAACATCAGAGCTACA 1456 Query 104497 TAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 104556 || || || ||| || ||||| | ||| |||| | |||| ||||| | || Sbjct 1457 GGAAGCTAC-ATAAAGGGTACCAATGGATACTCAAATGGACTCCTTCCCATGCTCAGAGT 1515 Query 104557 ATTTAACGCCACAGCGCGCTATGTAAATCA---AGCTGGGCGTCGAAAGGGATCTATCGC 104613 || || | ||||| | |||||| | || || ||| ||||||| || | || Sbjct 1516 CTTCAATGAGACAGCAAGATATGTAGACCAGGGAGGTGGAAAGAGAAAGGGTTCCTTTGC 1575 Query 104614 AGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCA 104673 |||||||||| || |||||||| |||||| | || | || | ||| | || || Sbjct 1576 CATCTATCTTGAACCCTGGCACGCTGATATCTTTGACTATCTCCAATTGAGAAAGAATCA 1635 Query 104674 AGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 ||| | || ||| || || || | ||| | ||| ||| |||| ||| | || Sbjct 1636 TGGTAAAGAAGAGCAACGAGCTCGTGACTTGTTCATGGGTCTATGGGTTCCTGATTTGTT 1695 Query 104734 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGG 104793 |||||||||||| | |||| ||| | ||| |||| || ||||| | | || || Sbjct 1696 CATGAAGAGAGTCCAAGAGAATGGAGACTGGACTCTTTTCTGTCCCAATGAAGCCAAGGG 1755 Query 104794 TCTCTCCGATGCCGT---GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGA 104850 ||| | ||| ||| || || ||||||||||| || ||| |||||| || || | Sbjct 1756 TCTTT---ATGACGTTTATGGCGATGAGTTTGAAGCTCTCTACCAAAAGTATGAAGAGCA 1812 Query 104851 AGGTC-GGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTC 104909 ||| | ||| | || || ||| | || ||| | || ||| | || | | Sbjct 1813 AGGACTTGGCCGC-AAAACTATGAAGGCTCAAAAAGTCTGGGAGGCCATTATTGAGGCCC 1871 Query 104910 AAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATC 104969 ||| || ||||| | || |||||||| ||||||||| | || | ||||| |||| Sbjct 1872 AAATTGAAACTGGAAATCCTTACATGCTCTACAAAGACCACGCCAATCGCAAGAGCAATC 1931 Query 104970 AAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG 105029 | ||||| | || ||||||||||| ||||||||| ||||| |||| | || Sbjct 1932 AGAAGAACCTTGGAACTATCAAGAGTTCTAATCTCTGTTGCGAAATTATGGAGTACACTT 1991 Query 105030 ACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC 105089 ||||||| |||||||| || || || ||| | ||||| | | | Sbjct 1992 CTGCTGATGAGATTGCTGTGTGCAATCTTGCCAGTATCTCACTCCC--------TCGCTA 2043 Query 105090 CAGAGACAAAGACATTT--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAA 105147 || ||| | ||| || ||||||| || || ||||| | | |||| | Sbjct 2044 CATCACCAATGGTGTTTTCGACCATGAAAAGCTACATTAAGTTGCCTATCAGATCACTAT 2103 Query 105148 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAA 105207 ||||| |||||| ||||||| |||| || || || ||| || | || || || Sbjct 2104 CAACCTGAACAGAATTATTGACGGAAACTTCTATCCTTGTGATGAGGCCAGAAACTCAAA 2163 Query 105208 TATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG 105267 ||||| ||| | || ||||| | ||| |||| ||||| || |||| | || ||| Sbjct 2164 TATGAAACATAGACCCATTGGAATAGGTATTCAAGGTCTGGCTGATGCTCTTATGCTTCT 2223 Query 105268 TCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCAT 105327 | | | || || ||| ||| | | | || | | |||||||| || Sbjct 2224 TAGAATTCCTTTCGAGGACGAAAGAGCTTATACATTTAACCAGGAAGTCTTTGAGACAAT 2283 Query 105328 GTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGA 105384 ||||| || ||| | | ||| ||| || |||||| || || || ||||| Sbjct 2284 TTATCATGCTGCTAT---GCAGAGCTCATGTGACTTGGCAAAGAAGGAAGGATACTATGA 2340 Query 105385 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGA--AGGT 105442 | | | || ||||| | ||||| | | ||||||||| | ||| | || Sbjct 2341 GAGTTATCCCGGCTCTCCTCTTAGTCAAGGCCAGTTCCAATTTGATCTTTGGAACGAGAA 2400 Query 105443 GAGACCAAGCTTCA-CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCT 105501 || || | || |||||||||| | || ||| || | || | || Sbjct 2401 GACTCCCACAAACAGATACGACTGGGCAAAGCTAAAGCAAGAAGTTGTACAGCACGGAGC 2460 Query 105502 TCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 105561 | | ||| |||| | |||| || ||||| || || |||||| | |||||| | || || Sbjct 2461 TAGAAACTCTCTCTTATTGGCACCCATGCCCACTGCTTCCACCTCTCAAATCCTCGGCAA 2520 Query 105562 TAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGA 105621 ||| || |||||||||||||||| || |||||||| |||||| || || ||||| Sbjct 2521 TAACGAGAGCTTTGAACCCTACACAACCAACATCTACACCAGAAGAGTGCTAGCAGGAGA 2580 Query 105622 GTTTGTGATTGTCAACAAGCATCTCGTGGATGAC 105655 || || ||| ||| || || ||| |||| Sbjct 2581 ATTCGTTTGTGTGAACCCTCACCTAGTGCGTGAC 2614 >seq2561 Length=3495 Score = 156 bits (172), Expect = 5e-33 Identities = 986/1558 (63%), Gaps = 72/1558 (5%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCT-TCAACGGC 104198 |||||| ||| || ||| ||||| ||| ||| | || ||||||| | || | || || Sbjct 2563 GACTACAACTATGATTACTTTGGGTTCAGAACATTAGA-AAGAGCTTACCTATTAAAGG- 2506 Query 104199 TCGATGGTGTCTTGAT---GGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 ||||| | || ||| | || || ||||| ||||| | || ||| |||| Sbjct 2505 ---ATGGTTCCACCATTTTGGAGAGACCTCAACACATGCTCATGAGAGTCAGCATTGGTA 2449 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG- 104314 |||| | |||| | | ||| | || |||||||| || ||| | | | | || Sbjct 2448 TTCACAAGCAAGATTTAGCTTCAGCATTTGAGACATATGATCTCATGAGCTA-GCTGTGG 2390 Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGT 104374 |||| |||||| || || || || ||||| |||| || || | || || ||| ||| Sbjct 2389 TTCACTCACGCCACTCCCACTCTTTTCAACTCTGGAACTCCCAAGCCTCAGATG---AGT 2333 Query 104375 TGCTTCCTTATCGCCAAC----AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTAC 104430 | ||| ||| | || || ||||||||||| || | || || | | |||||| | Sbjct 2332 T-CTTGCTTCTTGCTGACTGTCAAGGAGGACTCCATAGATGGAATATTCGAAACTCTGAA 2274 Query 104431 GGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAG 104490 | ||| ||||| ||| ||||| || || || | | || ||| | || Sbjct 2273 ACAAATTGCAATCATCTCTAAGGCTGCTGGTGGCATCGGTGTTTCCGTCTCAGATATCAG 2214 Query 104491 AGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 104550 ||| | | || ||| | || |||||||| | || | || | ||||| ||||| Sbjct 2213 AGCTGCTGACTCCTATATCAGAGGTACAAATGGATACTCCAACGGACTCATTCCTATGCT 2154 Query 104551 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGAT 104606 | || || || | ||| || | || ||| |||| | ||| || | |||| || Sbjct 2153 TAAGGTCTTCAATGACACCGCAAGATACGTAGATCAGGGTGG-CGGCAAAAGAAAAGGTG 2095 Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666 || |||| |||||| | |||||||||||| || ||| || ||||| || ||||| Sbjct 2094 CTTTCGCCGTCTATGTAGAGCCATGGCACAGTGACATCTATGACTTCCTCCAGCTGCGTA 2035 Query 104667 TCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 104726 ||||| ||| | || ||| | || || | |||| ||||||||||||||| | Sbjct 2034 AAAACCACGGTAAGGAAGAGAATAGAGCTCGTGACTTGTTCTACGCTCTCTGGATTCCTG 1975 Query 104727 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGG 104786 | | |||||| ||||||||| | | | | ||| ||||| | ||||| || || Sbjct 1974 ACTTGTTCATGCGAAGAGTTGAGCACAACGAAGACTGGACTCTCATGTGTCCCAACGAGT 1915 Query 104787 CACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA-- 104844 || || ||| || | ||| || || |||||| || ||| |||| || Sbjct 1914 GCCCAGGCCTCACCACCACTTGGGGAGAAGAATTTGAAAAGCTCTACGAGGAGTATGAAC 1855 Query 104845 -----GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATT 104899 ||| | ||||| |||| | | ||| | || | | || ||| || || Sbjct 1854 GCACTGGACG-CGGTCGCAAGACTATTAAG--GCCCGATG--GCTTTGGGGACAG--ATA 1802 Query 104900 CTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAA 104959 | ||||||||| |||||||| || || |||||||| |||||||| || || || | Sbjct 1801 GTAGAGTCTCAAATTGAGACTGGAACTCCTTACATGCTCTACAAAGATGCTTGCAATAGA 1742 Query 104960 AAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTG 105019 ||| || | | || | || || ||||| || ||||| || || || ||| | Sbjct 1741 AAGTCCAACTAGTAAAACCTAGGAACCATTAAGAGCTCGAATCTTTGCACTGAGATCGTA 1682 Query 105020 GAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAG 105079 || || ||| ||||| | |||||||| || || || || || |||||| | Sbjct 1681 GAGTTCACAAGTCCTGATGAAATAGCTGTGTGCAATCTTGCCTCTATTGCTCTC----AA 1626 Query 105080 TATGTGGATCCAGA-----GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGA 105134 || | || ||| || |||| || || ||||| ||||| |||| || || | Sbjct 1625 TAGATTCGTCAAGAAGGAGGAGCAAGA-ATACGACTATGAGAAACTGCACGCTGTCACTA 1567 Query 105135 AAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGA 105191 | | |||| || || ||||| | | |||| |||| |||| || || || |||| Sbjct 1566 AGAGAATCACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCAGTCGCTGAG- 1508 Query 105192 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGG 105251 |||||||| || ||| | | ||| | || ||||| ||||||| || || | || | Sbjct 1507 --GCTCGTAACTCAAATCTTAAGCACAGACCTATTGGAATCGGTGTGCAAGGGTTTGCCG 1450 Query 105252 ATGTATTCATTCTTTG-TCGCCA-CGCATTTGA--TTCCGACGAAGCGAAGGAAATCAAT 105307 ||| | | || ||| || | ||||||| ||| | ||| | | || Sbjct 1449 ATGCA--CTTTAATTGCTCAAAATTCCATTTGAAGATCCTCGTGCTCTAAG--ATTGAAC 1394 Query 105308 GCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAG 105367 | | ||| || |||||||| |||||||| | | || || | |||| || || Sbjct 1393 GAACTCATCTTCGAGACCATCTATCACGCATCCATGGAAGCTTCTATGGAGTAAGCTAAG 1334 Query 105368 GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTT 105427 ||||| || || || ||| | || || || ||| || |||| | | |||||| Sbjct 1333 GTTGAGGGACCCTACGAATCTTTCCCTGGCTCACCACTCTCCAAAGGACTCTTCCAATTT 1274 Query 105428 GATATGTGGGAAGGTGAGACCAAGCT----TCACTACGACTGGGAAGCTCTC--AAGGAA 105481 ||| | |||| || || || ||| || || || ||||||| |||| ||| | Sbjct 1273 GATTTATGGG-AGAAGAAGCCCTGCTCTGATCGATATGATTGGGAAGGTCTCAGAAGAGA 1215 Query 105482 CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCC 105541 | | | || | ||| | | ||| || || | ||||| |||||||| ||||| Sbjct 1214 TG--TAATTCAGTATGGTGCTAGAAACTCGCTGCTTCTAGCTCCTATGCCAACCGCCTCT 1157 Query 105542 ACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTG 105601 || | || || | || || || || ||||| |||||||| | ||| | ||| Sbjct 1156 ACTTCTCAGATTCTTGGAAACAACGAGACTTTTGAGCCCTACACCTCCAACGTGTATACC 1097 Query 105602 AGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCA 105659 |||||| ||||| || || ||| | || ||| || ||||| | ||||||| Sbjct 1096 AGAAGAGTGCTCGCTGGTGAATTTATCTGCGTGAACCCCCACCTCGTTAACGACCTCA 1039 >seq12789 Length=2278 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| || ||| |||| | || || || ||| ||||| ||||||||||| || || | Sbjct 934 CCTTCGCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCTCTT 875 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | ||||||||||| || || |||||||| || || ||||||||||| Sbjct 874 TCTGCTCCATCTTCTGGCTCAAGAAACGTGGCCTCATGCCCGGCCTGACCTTCTCCAACG 815 Query 94916 AGCTTATCTCTCGTGACGAggg 94937 || | ||||| ||||| ||||| Sbjct 814 AGTTGATCTCCCGTGATGAGGG 793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583076934323560