Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq18359 165 2e-35 seq7629 123 8e-23 seq7630 122 3e-22 seq24161 104 7e-17 seq9607 100 9e-16 seq17586 98.7 3e-15 seq4990 95.1 4e-14 >seq18359 Length=859 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| | | ||| || || || || ||||||||||| |||||||| ||||| || Sbjct 326 ACCACCTCTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCT 385 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | |||| ||||||||||| | ||||| |||||||| || | || ||||| || || Sbjct 386 GAGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGG 445 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| ||||| || || || || ||||| ||||| || || | || || ||||| || Sbjct 446 GATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGAC 505 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| | |||||||||||| || || ||||||||||| |||||| Sbjct 506 GTCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 Score = 163 bits (180), Expect = 9e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || | |||||| ||||| | ||||||||| ||||| || ||||| || | Sbjct 547 TTTGCATTCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGT 606 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || ||| |||| || ||||||||||| ||||| || || || || | || |||| Sbjct 607 AGTCGCTTAAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGAT 666 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| |||||||| || || || ||||| | ||||||| Sbjct 667 CGGGTGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATG 726 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || | |||| ||||||||||| || || || || ||||| ||||| Sbjct 727 GCTCAACGTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq7629 Length=3052 Score = 123 bits (136), Expect = 8e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| | | ||| || || | || || || ||||| ||||| || || |||||||| Sbjct 2722 CCACCTCTGAGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGAC 2781 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || |||| || ||||| | | |||||||||||||| || | || ||||||||||| Sbjct 2782 AAGGTTCTACCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGG 2841 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || |||||||| || || || || || || || | || || || || || Sbjct 2842 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACA 2901 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || | ||||| || || | || || || || |||| |||| Sbjct 2902 TCAAGGGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACATT 2949 >seq7630 Length=872 Score = 122 bits (134), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || | | ||| || || | ||||| |||||||| || || || || | Sbjct 490 TTTGCATACCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 549 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | |||| || ||||||||||| || ||||||||||| || | || || | Sbjct 550 AATCGCTGAGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGT 609 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || ||||| || || || || || || || || ||||| || || | || |||| Sbjct 610 CGGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATG 669 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || | || | ||||||||||| || || || || || || ||||| Sbjct 670 GCTCAACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 724 >seq24161 Length=681 Score = 104 bits (114), Expect = 7e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349539 AAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAA 349598 ||||||| || ||||| ||||||||| ||| |||||| | || | |||||| Sbjct 454 AAATTTCCGCAGAAGTTTTGCGCAAAATGAAGAAAACTGCTGAGGACTACCTCGGTGAAG 513 Query 349599 CAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAA 349658 ||| || || || ||||||||||| ||||| || ||||| ||||| || ||| |||| Sbjct 514 AAGTCACAGAAGCGGTTATTACTGTTCCAGCTTACTTTAACGATGCACAACGTCAAGCAA 573 Query 349659 CAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTG 349718 | |||||||| || | || || || || |||| | | || || || ||||| || | Sbjct 574 CCAAAGATGCAGGTCGTATCGCTGGTTTGGATGTAAAACGCATCATCAACGAACCAACAG 633 Query 349719 CTGCAGCAATTGCATATGGGCTTGATAAAA 349748 |||| ||| | || | || || || |||| Sbjct 634 CTGCGGCATTGGCTTTCGGTCTCGACAAAA 663 >seq9607 Length=5752 Score = 100 bits (110), Expect = 9e-16 Identities = 255/385 (66%), Gaps = 6/385 (2%) Strand=Plus/Minus Query 378126 TCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATC 378185 ||| || |||||||| ||| || || |||| ||||| |||| ||||| ||| Sbjct 2970 TCCGTCCTCTCCATAAATGAACTGCACGATTTACTCTTTGGAAGTTCTGACAGTTCCATC 2911 Query 378186 ATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTG 378245 ||| | ||||| | |||||| | ||||||||| | || || ||| || || || | Sbjct 2910 ATACTTCACCATCACATCTTCCATTGCTTTAATCAATCTTCTTTGAATGTAGCCTGTCTC 2851 Query 378246 ACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAA 378305 ||| ||||||||||||||||| | || | | || ||||| || |||||||| || Sbjct 2850 TGCAGTCTTAACTGCAGTATCAATAAGTCCCTCTCTTCCTCCCATAGCGTGGAAGAAAAA 2791 Query 378306 TTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCT---CTTGCGCCTGG 378362 || |||||| | ||| | | | | |||||| |||||| ||| || | Sbjct 2790 CTCTTGAGGAGTTAATCCCTTCAGATAGCAGTTCTCAACGAATCCTTTGCTTTCG-GGGC 2732 Query 378363 CGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCG 378422 |||| ||||| |||| | ||||| | | | | | || ||| ||||||| || Sbjct 2731 CGAA--ATCATCCTTTGCGAAGTGAGGCAGAGATCTTCTGTGGAAGCCAAATGGAATACG 2674 Query 378423 TTTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAGCAATATTTAAATCACT 378482 ||||| ||||| || || ||||| | || | || |||| ||| || | | | Sbjct 2673 CTTTCCTTCAACGTTTTGCTGACCCACGCAAGCCATAATCTGAGAAATGTTGAGGTTAGA 2614 Query 378483 ACCTTTAGACCCAGCATTAACCATA 378507 |||||||| || || | ||||||| Sbjct 2613 TCCTTTAGAGCCTGCGTAAACCATA 2589 >seq17586 Length=3380 Score = 98.7 bits (108), Expect = 3e-15 Identities = 230/343 (67%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 378168 GTTTCTTACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCG 378227 |||||| ||||| ||||||| | ||||| | |||||| | ||| || || | || || Sbjct 2685 GTTTCTCACAGTACCATCATATTTCACCATCACATCTTCCAGTGCCTTTATCAATCTTCT 2626 Query 378228 AGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACC 378287 | ||||||||||| | ||||| || || |||||||| | ||| | | || || Sbjct 2625 CTATATATAACCAGTCTCTGAGGTTTTGACAGCCGTATCAATAAGACCTTCTCTTCCTCC 2566 Query 378288 CATTGCATGGAAGAATAATTCA-GTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAA 378346 ||| |||||||| || || ||| || || ||| |||| ||| | ||| | || Sbjct 2565 CATAGCATGGAAAAAGAACTCATGTGGGTCCAAG-CCACTGATATAATTGTTCTTTACAA 2507 Query 378347 ATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAA 378406 | ||| | | ||||| || || | || ||||||||| || | |||| || Sbjct 2506 AGCCTTTAGACTCTGGCCCATAGTCGTGCTTGCAGAAATGAGGTAGGGTCCTATTCCTAA 2447 Query 378407 ACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGACCAAGTGCAGAAACC---ATTT 378463 | || | |||||| ||| || || || ||||||||||| | || || || |||| Sbjct 2446 AGCCGAACTGAATTCTTTTACCCTCTACGTTCTGTTGACCGA---CACAACCCATGATTT 2390 Query 378464 GAGCAATATTTAAATCACTACCTTTAGACCCAGCATTAACCAT 378506 ||| ||| || | | | |||||||| || || || ||||| Sbjct 2389 GAGAAATGTTAATGTTCGTTCCTTTAGAGCCTGCGTTCACCAT 2347 >seq4990 Length=5674 Score = 95.1 bits (104), Expect = 4e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 378118 GGATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACA 378177 ||||| | |||||||||||||| ||||||||| || | || | | |||| ||| Sbjct 1589 GGATCCAGACCATCATCTCCATACTAGAATTGAATGATGTGCTCAGTGCTTGTTCTCACA 1648 Query 378178 GTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAA 378237 ||| |||||| | || |||||| || | ||||| || |||| || ||||| Sbjct 1649 GTCTCATCATACTTCACAGATAAATCCTCAAGAGCTTTCATGAGTCTTCTTTGCATATAG 1708 Query 378238 CCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGG 378297 ||||| | ||||||||||| ||||| | | ||| | | ||| || |||| ||| Sbjct 1709 CCAGTCTCTGCGGTTTTAACTGCTGTATCTACGAGACCTTCTCTACCTCCAATTGTGTGG 1768 Query 378298 AAGAATAATTCAGTAGGAGTAAGTCCA 378324 ||||| ||||| || | |||||| ||| Sbjct 1769 AAGAAAAATTCTGTTGCAGTAAGGCCA 1795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514764793365857