Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2561 140 4e-28 seq12789 138 1e-27 seq8878 125 8e-24 >seq2561 Length=3495 Score = 140 bits (154), Expect = 4e-28 Identities = 342/516 (66%), Gaps = 2/516 (0%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 |||||||| || || |||||| || || ||||| ||||| || || || ||||||||| Sbjct 2419 GAGACATATGATCTCATGAGCTAGCTGTGGTTCACTCACGCCACTCCCACTCTTTTCAAC 2360 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 | || || ||| || |||||| || ||| | || || | ||||| ||| | Sbjct 2359 TCTGGAACTCCCAAGCCTCAGATGAGTTCTTGCTTCTTGCTGACTGTCAAGGAGGACTCC 2300 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || || || || | ||| || || || | || |||||| ||| | || || Sbjct 2299 ATAGATGGAATATTCGAAACTCTGAAACAAATTGCAATCATCTCTAAGGCTGCTGGTGGC 2240 Query 19346 ATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGA 19405 ||||| | | ||| ||||| | | || | |||| || || || ||| Sbjct 2239 ATCGGTGTTTCCGTCTCAGATATCAGAGCTGCTGACTCCTATATCAGAGGTACAAATGGA 2180 Query 19406 GTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAAC 19465 || |||| || | || ||||| |||||||| |||| || || ||||| | Sbjct 2179 TACTCCAACGGACTCATTCCTATGCTTAAGGTCTTCAATGACACCGCAAGATACGTAGAT 2120 Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 ||||| ||||||||| | || || | |||||| |||| | |||||||||||| ||| Sbjct 2119 CAGGGTGGCGGCAAAAGAAAAGGTGCTTTCGCCGTCTATGTAGAGCCATGGCACAGTGAC 2060 Query 19526 GTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGAC 19585 || || |||||| | ||||| ||||| ||| | || |||| | ||| ||| Sbjct 2059 ATCTATGACTTCCTCCAGCTGCGTAAAAACCACGGTAAGGAAGAGAATAGAGCTCGTGAC 2000 Query 19586 CTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAG-GTTGAGAAGGACGAAGA 19644 | ||| || | |||||||| ||| | ||||| | |||| |||||| | ||||||| Sbjct 1999 TTGTTCTACGCTCTCTGGATTCCTGACTTGTTCAT-GCGAAGAGTTGAGCACAACGAAGA 1941 Query 19645 ATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 ||| || ||||| || |||| ||||| ||||| Sbjct 1940 CTGGACTCTCATGTGTCCCAACGAGTGCCCAGGCCT 1905 >seq12789 Length=2278 Score = 138 bits (152), Expect = 1e-27 Identities = 348/523 (67%), Gaps = 6/523 (1%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||| | ||| | | |||||||| | ||||| || ||||||||| || Sbjct 1312 TGTACAAGGACCAGATGGCTGCATTCTGGACATCTGAGGAAATCGACCTCGCCACCGATG 1253 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | ||||| ||||| || ||| || |||| |||| || ||||| || || |||| Sbjct 1252 TTAAGGACTGGGAGCGCCTTAATGACAACGAAAAGCACTTTGTCAAGCACGTGCTCGCCT 1193 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || | || || | | | ||| || | || || Sbjct 1192 TCTTCGCTGCCTCCGACGGTATCGTCAACGAGAACCTCGCCCAGAAGTTCTGCACTGAGA 1133 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACT 59832 | ||| | ||||||| || | ||||| | | || | | | ||| ||||||| Sbjct 1132 TTCAGGTGCCCGAGGCTCGCTGCTTCTATGGTTTCCAAATGATGATGGAGAACATCCACT 1073 Query 59833 CCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTC 59892 ||||||| ||||| ||| ||||||||| | || || || | ||||| | | Sbjct 1072 CCGAGACCTACTCACTCCTGATCGATACCCTCATCTCAGACCCTCATGAGAAAGAGTTCC 1013 Query 59893 TGTTCCGTGCCATAG-AGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAG 59951 | ||| || | | | || ||||| | || | | || || || ||||| | | Sbjct 1012 TCTTCAAGGCTACTGCAAACATCCCCGTC-GTCACTAAGAAGGCTGATTGGGCTCTCCGC 954 Query 59952 TGGATGA--GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAG 60009 ||||| | | || ||| | || || | | || | || || ||| ||||| | Sbjct 953 TGGATCAACGACCAC-AGCGCC-TTCGCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAGG 896 Query 60010 GAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069 | ||||||||||| ||||| ||||| | || ||||||||||| || ||||||||||||| Sbjct 895 GCATCTTCTTCTCCGGCTCTTTCTGCTCCATCTTCTGGCTCAAGAAACGTGGCCTCATGC 836 Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 | ||||||| |||||||||||| |||| ||||| || ||||| Sbjct 835 CCGGCCTGACCTTCTCCAACGAGTTGATCTCCCGTGATGAGGG 793 >seq8878 Length=3384 Score = 125 bits (138), Expect = 8e-24 Identities = 237/346 (68%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 79464 GAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCG 79523 |||| |||| | ||| || |||||||| || || ||||||||||| || |||||||| | Sbjct 1618 GAGATAGTCAAAGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCT 1559 Query 79524 CTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCAC 79583 ||| || || ||||||| || || | || || | ||||| |||| ||||||||| | Sbjct 1558 CTTTCCACCTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAG 1499 Query 79584 GATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA 79643 || || | | | || || || || || || | || | || | ||||| | Sbjct 1498 GAGTCCATTTGAGTATCCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTT-GT 1440 Query 79644 GCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCT 79702 | | || | ||| | || || | | ||| || ||| | || | |||||| || | Sbjct 1439 GAACTGCAAGTCCTACTCCACCAGCACTCTTAGAAATGAGTGCTACGTTCTTGAGAGTAT 1380 Query 79703 CGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTG 79762 ||||||| || | ||| |||||||||||||| || || ||| ||| ||| || | Sbjct 1379 CGTAGATACCGTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAG 1320 Query 79763 GGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 | ||| ||||| ||||||||||| || || || || || ||||| Sbjct 1319 GCTTGGGGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAA 1274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548351884413360