Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2561 158 1e-33 seq12789 104 3e-17 seq24245 89.7 6e-13 >seq2561 Length=3495 Score = 158 bits (174), Expect = 1e-33 Identities = 352/521 (68%), Gaps = 8/521 (2%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| || || | |||||| | || || || |||||||| || || || ||||| Sbjct 2420 TGAGACATATGATCTCATGAGCTAGCTGTGGTTCACTCACGCCACTCCCACTCTTTTCAA 2361 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 | |||| || | ||||||||| |||||| || || | | ||||| ||||| Sbjct 2360 CTCTGGAACTCCCAAGCCTCAGATGAGTTCTTGCTTCTTGCTGACTGTCAAGGAGGACTC 2301 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || || || | ||| || || || | ||| |||||| ||| | ||||| Sbjct 2300 CATAGATGGAATATTCGAAACTCTGAAACAAATTGCAATCATCTCTAAGGCTGCTGGTGG 2241 Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 |||||| | | ||| | || | || | | | |||| || || || || Sbjct 2240 CATCGGTGTTTCCGTCTCAGATATCAGAGCTGCTGACTCCTATATCAGAGGTACAAATGG 2181 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | || | ||| || | |||||||| |||||||| |||| || | ||||| | Sbjct 2180 ATACTCCAACGGACTCATTCCTATGCTTAAGGTCTTCAATGACACCGCAAGATACGTAGA 2121 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 |||||||| || || | || || | |||||| |||| | ||||| |||||| || Sbjct 2120 TCAGGGTGGCGGCAAAAGAAAAGGTGCTTTCGCCGTCTATGTAGAGCCATGGCACAGTGA 2061 Query 53602 CAT-TATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCCG 53658 ||| |||| | || ||| |||||||| || || ||| | ||||||| | ||| || Sbjct 2060 CATCTATG-ACTTCCTCCAGCTGCGTAAAAACCACGGTAAGGAAGAGAATAGAGCT--CG 2004 Query 53659 TGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 |||| |||| ||| ||||| |||||||| ||| | ||||||| || || ||| | ||| Sbjct 2003 TGACTTGTTCTAC-GCTCTCTGGATTCCTGACTTGTTCATGCGAAGAGTTGAGCACAACG 1945 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC 53758 | || ||| || ||||| || ||||||||||| |||||| Sbjct 1944 AAGACTGGACTCTCATGTGTCCCAACGAGTGCCCAGGCCTC 1904 >seq12789 Length=2278 Score = 104 bits (114), Expect = 3e-17 Identities = 291/444 (66%), Gaps = 2/444 (0%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| || || || || | ||||| ||||| || ||||| ||||| | ||| |||||| Sbjct 808 ATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATG 867 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||||| || || |||||||||||| || ||| || ||||| ||||| | | Sbjct 868 GAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCG 927 Query 74904 GCGAACGGTGCATCGGAAG-TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC 74962 ||||| || || || | | ||||| ||||||| ||||| || |||| | Sbjct 928 GCGAA-GGCGCTGTGGTCGTTGATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACGAC 986 Query 74963 AGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTT 75022 |||| | | | || | ||||||| | ||||| | || || || ||| | Sbjct 987 GGGGATGTTTGCAGTAGCCTTGAAGAGGAACTCTTTCTCATGAGGGTCTGAGATGAGGGT 1046 Query 75023 GTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTA 75082 || |||| |||||||| ||||| || || || ||| | | | ||| | | || Sbjct 1047 ATCGATCAGGAGTGAGTAGGTCTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATA 1106 Query 75083 GAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCAT 75142 ||| | || ||||| | | ||| | || | | || ||| | ||| ||||| | Sbjct 1107 GAAGCAGCGAGCCTCGGGCACCTGAATCTCAGTGCAGAACTTCTGGGCGAGGTTCTCGTT 1166 Query 75143 GACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202 |||||| ||||| ||||| ||||| || || || || |||| |||||| || | Sbjct 1167 GACGATACCGTCGGAGGCAGCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGTT 1226 Query 75203 GTCAGTGAGTTTGTCCCAATCCTT 75226 |||| | || ||||| ||||| Sbjct 1227 GTCATTAAGGCGCTCCCAGTCCTT 1250 >seq24245 Length=617 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 124671 GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATG 124730 |||||||||||||||||||| ||| || || | ||| || || || |||| ||| Sbjct 392 GTAATCTTGCGCGTCACAAATTCGCGCCCACGCAACGGAGATTCATGATTAAACAAAATA 333 Query 124731 CCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAG 124790 ||| |||| ||||| || || || || || || || || |||||||||||| || | Sbjct 332 CCACTACAAGCAAAGATTCCATAAGATTCACGATAATTAATCGTCATCCAATGGGCATAC 273 Query 124791 AGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGT 124850 | || | || ||||| ||||| || || || || || || |||| ||| | | Sbjct 272 AATTTTGCGACACCATACGGGCTACGAGGATAAAACGGTGTTGATTCAACTTGCGGAACA 213 Query 124851 TGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGAATTTT 124904 ||| | ||||| |||||||| || || ||| || || || ||||||| Sbjct 212 GCCTGTACTTTCCCGAACATCTCGGATGTCGACGCTTGGTA-AAAGCGAATTTT 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547043496996200