Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq18359 143 3e-29 seq2561 136 5e-27 seq7630 131 2e-25 seq7629 116 4e-21 seq18358 111 2e-19 >seq18359 Length=859 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || ||||| ||||| |||||| | || |||||| || | Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCT 722 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||||||||| |||||||||||||| || || || || || Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAA 662 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| || || |||||||| || || | | ||| || ||||| || Sbjct 661 CAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAAC 602 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 | || ||||| |||||||||||| Sbjct 601 ATTCAGAAGGAGTCCACTCTTCAT 578 >seq2561 Length=3495 Score = 136 bits (150), Expect = 5e-27 Identities = 312/461 (68%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || || ||||||||||| || | || |||| | ||| ||||| ||||| || ||||| Sbjct 1638 GAGGCAAGATTGCACACAGCTATTTCATCAGGACTTGTGAACTCTACGATCTCAGTGCAA 1697 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | ||| || |||||| || || ||||||| || ||| ||||| |||||||| || Sbjct 1698 AGATTCGAGCTCTTAATGGTTCCTAGGTTTTACTAGTTGGACTTTCTATTGCAAGCATCT 1757 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 |||||| |||||| || || || ||||| | || |||| | || |||||| | Sbjct 1758 TTGTAGAGCATGTAAGGAGTTCCAGTCTCAATTTGAGACTCTACTATCTGTCCCCAAAGC 1817 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTC 81146 || ||||| | |||||| || | |||||| |||| ||||| Sbjct 1818 CATCGGGCCTTAATAGTCTTGCGACCGCGTCCAGTGCGTTCATACTCCTCGTAGAGCTT- 1876 Query 81147 GTCGAA--CTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 || || ||| | || | || |||||| ||||||||||||| || ||||| || Sbjct 1877 TTCAAATTCTTCTCCCCAAGTGGT--GGTGAGGCCTGGGCACTCGTTGGGACACATGAGA 1934 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTT--CATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 |||||| || || ||| || ||| |||||| |||||| |||||||| ||| Sbjct 1935 GTCCAGTCTTCGTTGTGCTCAAC--TCTTCGCATGAACAAGTCAGGAATCCAGAGAGCGT 1992 Query 81263 TGAACAGGTCGCGGCAGCGC--GCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAA 81320 ||||| ||| || ||| | ||| || | ||| ||||| |||| || ||| || Sbjct 1993 AGAACAAGTCACG--AGCTCTATTCTCTTCCTTACCGTGGTTTTTACGCAGCTGGAGGAA 2050 Query 81321 GTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 ||| |||||| ||||||||||| | ||| ||||||| Sbjct 2051 GTCATAGATGTCACTGTGCCATGGCTCTACATAGACGGCGA 2091 >seq7630 Length=872 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| |||||||| ||||| || || | || |||||| || Sbjct 724 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTGAGCCATCC 665 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || |||||||||||||| || || ||||| Sbjct 664 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAA 605 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||| | || || |||||||| |||||||| || || | | ||||| ||| || || || Sbjct 604 CAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGC-GATTACAA 546 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| || || ||||| Sbjct 545 CATCCAGAAGGAGTCTACCCTTCA 522 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || |||||||| |||||| | Sbjct 496 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCTCA 437 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||| || || ||||||||||| || ||||| || || || Sbjct 436 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAA 377 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || || || || ||||| || || || | | || || | ||||| || Sbjct 376 CAAAGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAAC 317 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || || || | ||| || | || | ||||| || Sbjct 316 ATTCAGAAGGAGTCAACCCTCCACTTGGTCCTGAGACTCAGAGGTGGTCA 267 >seq7629 Length=3052 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| | ||||| |||||||| | || || |||||||| || ||||| || ||| | Sbjct 2949 AATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCCTTC 2890 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || |||||||||||||| || || ||||| || || Sbjct 2889 CGACACCATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCA 2830 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || |||||||| ||| | | || || | | | ||| | | || || || Sbjct 2829 ACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATTACAA 2770 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||||||||| ||||| || || Sbjct 2769 CATCCAAAAGGAGTCCACCCTCCA 2746 >seq18358 Length=408 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||| || ||||| || || || || ||||| || || || || |||||| || | Sbjct 260 ATGTAAATTTTCGTCAAAACCCTCACTGGAAAGACCATCACCCTCGATGTTGAGCCATCT 319 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || |||||||||||||| || || || || ||||| Sbjct 320 GACACCATTGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCACCTGACCAA 379 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| | || ||||| ||||| ||||| Sbjct 380 CAGAGACTCATTTTCGCTGGAAAGCA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570130616775280