Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7630 104 1e-17 seq18359 93.3 3e-14 >seq7630 Length=872 Score = 104 bits (114), Expect = 1e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | |||||| || || || |||||| || ||||| ||||| Sbjct 498 CCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 557 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||||||||| || || ||||| || | | ||||||||| || || Sbjct 558 AGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGG 617 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| |||| || | || || | || ||||| ||| || Sbjct 618 ATTCCCTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAAC 676 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTG 34714 |||| ||| || || || ||||| | || || || || || ||||||||| ||| Sbjct 677 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTTGTTTG 732 >seq18359 Length=859 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| |||||| |||||| |||||||| || || | |||| |||||||| Sbjct 573 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTGCCGTCTTCA 632 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || ||||| || || | | |||||| || || || | ||||||||||| | Sbjct 633 AGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCCTTGTCCTGG 692 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| | || ||| | ||| ||||| ||| || |||| || || || || Sbjct 693 AT-TTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTAATGGTCTT 751 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || ||||| ||||| ||||| Sbjct 752 TCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||||||||||||||| || || |||| | |||||||| | Sbjct 351 TGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCATCTTCAAGCTAC 410 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | | |||||| || || || | |||||| |||||| |||| || Sbjct 411 TTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATC-TT 469 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||| || | || ||||| | || || || | || || || || ||||| Sbjct 470 GGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGATTGTCTTTCCGGT 529 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || |||||||| ||||| Sbjct 530 GAGAGTCTTTACAAAAATTTGCAT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314632865792027