Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18359 131 1e-25 seq7629 125 6e-24 seq7630 111 1e-19 seq20592 91.5 1e-13 >seq18359 Length=859 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | |||||| | || || || || || Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCT 722 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || ||||| || ||||| |||||||||||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAA 662 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || ||| | |||||| | ||| | ||| |||||| Sbjct 661 CAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAAC 602 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||| |||||||| || | ||||||||| Sbjct 601 ATTCAGAAGGAGTCCACTCTTCATTTGGTT 572 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||| ||||| ||||| ||| | || || || || || ||||| ||| Sbjct 553 ATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTCC 494 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| || || ||||||||||| || || |||||||||||| Sbjct 493 GACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAA 434 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || | | ||||| || || | ||| || ||| Sbjct 433 CAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAAC 374 Query 27168 ATTCAAAAGGAGTCGAC 27184 |||||||||||||| || Sbjct 373 ATTCAAAAGGAGTCTAC 357 >seq7629 Length=3052 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||| |||| || ||| |||| || ||||| ||||| || ||| Sbjct 2948 ATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCCTTCC 2889 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| ||||| ||||| || || || |||||| Sbjct 2888 GACACCATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAA 2829 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || | ||||||||| || ||| | || ||||||||| Sbjct 2828 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATTACAAC 2769 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| ||| | || ||||| Sbjct 2768 ATCCAAAAGGAGTCCACCCTCCACTTGGT 2740 >seq7630 Length=872 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||||||| | || |||||||| || || || || Sbjct 496 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCTCA 437 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || ||||| ||||| || || ||||||||| Sbjct 436 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAA 377 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| ||||| || | |||||| | || |||| || |||||| Sbjct 376 CAAAGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAAC 317 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||| ||| | || ||||| Sbjct 316 ATTCAGAAGGAGTCAACCCTCCACTTGGT 288 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || ||||| ||| | || || | || || || || || Sbjct 725 CATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTGAGCCATC 666 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| ||||| || || |||||||| || || || |||||||| || Sbjct 665 CGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCA 606 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | | || | || ||||| ||| | |||||| | ||| | ||||||||| Sbjct 605 ACAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGCGATTACAA 546 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || |||||||| ||| | || ||||| Sbjct 545 CATCCAGAAGGAGTCTACCCTTCACTTGGT 516 >seq20592 Length=348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||| | || || || ||||| || || || || ||||||| | || || || || || Sbjct 172 CATGTAAATCTTCGTTAAAACACTCACTGGTAAAACTATTACCTTAGACGTTGAGCCATC 113 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| || || |||||||| ||||| || ||||||||||| Sbjct 112 AGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 53 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGT 27146 ||| | || || | ||| || ||||||||||||||| || Sbjct 52 ACAAAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGT 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434781297410880