Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_028950.1 Length=223932 Score E Sequences producing significant alignments: (Bits) Value seq21304 98.7 1e-15 >seq21304 Length=1801 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 99224 TCAGGAACCACATCGCCAGCACGACGAACGATCACCTTATCGCCAATTCGCAGACCTTTG 99283 ||||||| |||||| || ||||| || ||||| || | || || | || | | |||| Sbjct 546 TCAGGAATCACATCTCCCGCACGCCGCACGATGACTGTGTCACCGACTCTTACATCTTTA 487 Query 99284 CGATGGATTTCATCTTCGTTATGCAGTGTTGCGTTGGAAACCCACACACCGCCCACGAAA 99343 || || || || |||||||| || | || ||||| | || ||||||||| || ||| Sbjct 486 CGCTGAATCTCTTCTTCGTTGTGTAAAGTCGCGTTTGTTACTGTCACACCGCCAACAAAA 427 Query 99344 ACGGGCTTCAGGCGCCCCACGGGGGTGATGGCTCCCGTTCTACCTACTTGAACTTCAATC 99403 ||||| | || | || || || || || || || | ||| ||||||||||| || Sbjct 426 ACGGGGGCTAAACGAGCGACCGGTGTAATTGCACCAGTACGACCAACTTGAACTTCGATA 367 Query 99404 GCCTCTAGCGTCGTTACAGCCTCTTCTGCAGGGAACTTCCACGCGATAGCAAAACGAGGG 99463 || | || || | || ||||| || || || || ||||| |||||||| || Sbjct 366 TCCAACACAGTTGTCAATGCTTCTTCCGCGGGAAATTTATGAGCGATGGCAAAACGCGGC 307 Query 99464 GCGCGAGACACA 99475 || || || ||| Sbjct 306 GCACGCGAAACA 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716228546706080