Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7630 190 5e-43 seq18359 188 2e-42 seq7629 165 2e-35 seq18358 109 1e-18 seq20592 87.8 4e-12 >seq7630 Length=872 Score = 190 bits (210), Expect = 5e-43 Identities = 173/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | ||| || || ||||| || || ||||| || || | ||| || ||| Sbjct 279 AGTCTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTT 338 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| ||||||||||||||||||||||| | |||||| || || |||| |||||| Sbjct 339 CCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTCC 398 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| |||||||| |||||||| || ||| ||||| || |||||| Sbjct 399 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAACATCAAGAGTG 458 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| || || | ||||| Sbjct 459 ATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 496 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | |||||| || ||||| || |||||||| ||||| ||||| || Sbjct 506 AAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCT 565 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||| || |||||||| || ||||| || | |||||||| || || | ||| || Sbjct 566 GCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTC 625 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||| |||||||| || || || ||||||||||| || ||||| || | || Sbjct 626 CTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACGTCCAAGGT 685 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || || ||||| || || | ||||| || Sbjct 686 GATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTT 727 >seq18359 Length=859 Score = 188 bits (208), Expect = 2e-42 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| ||||| ||||| ||||| ||||| |||||||| || || || || Sbjct 336 AGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTA 395 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| |||| ||| || || |||||||| | ||||| || || || | ||| || Sbjct 396 CCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCT 455 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| |||||| || ||||||||||| ||| ||| || ||||| ||| Sbjct 456 TTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTG 515 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || |||||||| ||||||||||||||||| | |||||| Sbjct 516 ATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||||||||||| || || ||||| || || | ||| || || Sbjct 566 TCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTGCC 625 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| || ||||| || ||||| || || | ||||| || || || | || ||||| Sbjct 626 GTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCCTT 685 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||||||| || || ||||| || ||||||||||| ||||| || | ||| || Sbjct 686 GTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTAAT 745 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| ||||| || || | ||||| Sbjct 746 GGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq7629 Length=3052 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | ||| || |||||||| ||||||||||| ||||| | | ||| || Sbjct 2731 AGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGACAAGGTTCTA 2790 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||||| || ||| || || ||||| || | ||||| |||||||| | |||||| Sbjct 2791 CCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGGATACCTTCC 2850 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| |||||||||||||||||||| || || || || || ||| Sbjct 2851 TTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACATCAAGGGTG 2910 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || | |||||| || || | || |||||| Sbjct 2911 ATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACATTTT 2951 >seq18358 Length=408 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 |||||| || ||||| || || | ||||||||||| || | |||||||||||||| || Sbjct 406 CTGCTTTCCAGCGAAAATGAGTCTCTGTTGGTCAGGTGGGATACCTTCCTTGTCCTGAAT 347 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| || || ||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 346 CTTGGCCTTGACATTTTCAATGGTGTCAGATGGCTCAACATCGAGGGTGATGGTCTTTCC 287 Query 211088 CGTGAGAGTCTTTACAAA 211105 ||||| || || || || Sbjct 286 AGTGAGGGTTTTGACGAA 269 >seq20592 Length=348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| || || ||||||| || || || |||||||| | | |||||| || || || Sbjct 5 AGGGTTCTACCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGG 64 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | ||||||||||| |||||||| || || ||||||||||| || || ||||| Sbjct 65 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAACG 124 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || | || || || || || ||||| || || || || Sbjct 125 TCTAAGGTAATAGTTTTACCAGTGAGTGTTTTAACGAA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158777456616935