Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7630 86.0 4e-12 seq7629 82.4 5e-11 >seq7630 Length=872 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || |||||||| ||||| || ||||| || ||||| | || ||||| | Sbjct 727 AACATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTGAGCCA 668 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| || || | || || || Sbjct 667 TCCGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAGGGAATCCCACCCGA 609 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | | || ||||| ||||| ||||| ||||||| | || | ||||||| Sbjct 608 CCAACAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGCGATTA 549 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 548 CAACATCCAGAAGGAGTCTAC 528 >seq7629 Length=3052 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| |||| ||||| || || | || || || || ||||| || || || || | Sbjct 2951 AAAATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCCT 2892 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || ||| ||||| |||||| | || || ||| Sbjct 2891 TCCGACACCATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGAT 2832 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | | || ||||| || || | ||||||||| | || || |||||| Sbjct 2831 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATTAC 2772 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 2771 AACATCCAAAAGGAGTCCAC 2752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337905710531252