Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7630 172 1e-37 seq18359 165 2e-35 seq7629 165 2e-35 seq20592 125 2e-23 seq18358 100 7e-16 >seq7630 Length=872 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||||||| | |||||| || || || || || | ||||| || | | |||||| Sbjct 279 AGTCTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTT 338 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| || ||||||||||||| |||||| ||||| |||||||||||| Sbjct 339 CCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTCC 398 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| |||||| |||||||| ||||||| || || || | ||| Sbjct 399 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAACATCAAGAGTG 458 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || | || || | ||| | |||||| Sbjct 459 ATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 496 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| || || | ||| || || || || || |||| ||||||||| | ||||| Sbjct 506 AAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCT 565 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| || ||||| ||||| ||||| |||| ||||||||||| || || || || Sbjct 566 GCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTC 625 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||||||||||| ||| ||| ||||||||||| || | || ||||| || || Sbjct 626 CTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACGTCCAAGGT 685 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| ||||| || || | || || | ||| | |||||| || Sbjct 686 GATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTT 727 >seq18359 Length=859 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| ||||||||||| || || ||||| | || || ||| | |||||| Sbjct 336 AGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTA 395 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||| ||| || || |||||||||| ||||| ||||| || || || || Sbjct 396 CCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCT 455 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| |||||| ||||||||||| |||| ||| ||||| | ||| Sbjct 456 TTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTG 515 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| || || | ||| |||| || | ||||||| Sbjct 516 ATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 >seq7629 Length=3052 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | |||||| ||||| || ||||||| |||||||| | ||| ||||| Sbjct 2731 AGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGACAAGGTTCTA 2790 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| | || ||| ||||| ||||| |||| ||||| || || || ||||||||| Sbjct 2791 CCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGGATACCTTCC 2850 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| |||||| |||||||||||| || | ||||| || | ||| Sbjct 2851 TTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACATCAAGGGTG 2910 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || |||||||| || | ||| | | |||||| Sbjct 2911 ATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACATTTT 2951 >seq20592 Length=348 Score = 125 bits (138), Expect = 2e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 ||||| || ||||| | || || ||||||||||| | || |||||| ||||| || ||| Sbjct 8 GTTCTACCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGGATA 67 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 |||||||||||||||||||| ||| ||| ||||||||| ||||| | || |||||| Sbjct 68 CCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAACGTCT 127 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || || || | ||||| | ||| | || ||| || Sbjct 128 AAGGTAATAGTTTTACCAGTGAGTGTTTTAACGAAGATTTACATGTT 174 >seq18358 Length=408 Score = 100 bits (110), Expect = 7e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 |||||| |||||||| || |||| |||||||| || || |||||||||||||| || || Sbjct 406 CTGCTTTCCAGCGAAAATGAGTCTCTGTTGGTCAGGTGGGATACCTTCCTTGTCCTGAAT 347 Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| ||| ||| ||| |||||||| || | || || || | ||||| ||||| || Sbjct 346 CTTGGCCTTGACATTTTCAATGGTGTCAGATGGCTCAACATCGAGGGTGATGGTCTTTCC 287 Query 225687 CGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || | ||||| | ||| | || ||| || Sbjct 286 AGTGAGGGTTTTGACGAAAATTTACATATT 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192145871181986