Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq24649 87.8 3e-12 >seq24649 Length=1633 Score = 87.8 bits (96), Expect = 3e-12 Identities = 185/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 99857 TCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCG 99916 || || ||||| ||||||||||| || ||| | || | ||||| || || ||||| || Sbjct 1255 TCATGCCAGCTATATCAACGCAGTGCAGATATTTTTCTTGGGGTTCCATTCAATATCGCA 1196 Query 99917 TCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAACATGACCGTGGGTGATTTC 99976 || || ||||| |||| || ||| ||||||| || || | || || || || || Sbjct 1195 TCCTATGCTTTATTGACACATATGGTTGCACAACAAACTGATCTGCAAGTTGGGGACTTT 1136 Query 99977 GTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACC--CGTACCC 100034 | ||| ||||||| ||| ||| | |||| || || |||||||| | || | | Sbjct 1135 ATTTGGACTGGTGGCGACTGTCATTTATACAGCAATCACATGGAACAAGTCGACGAA--C 1078 Query 100035 AGTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCA 100094 | ||| || | || | ||| ||||| | || | || ||||||||| | Sbjct 1077 AATTATCGCGAACACCCCATCCATTACCAACACTAACAATTTTGCGTAAGCCAACAAGTA 1018 Query 100095 TCTTCGAATATAAGTTTGAAGACTTCGAACTTGA 100128 | || || ||||| |||||||| ||||| |||| Sbjct 1017 TTTTTGATTATAAATTTGAAGATTTCGAGATTGA 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716238143679800