Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8878 174 2e-38 seq12789 132 7e-26 >seq8878 Length=3384 Score = 174 bits (192), Expect = 2e-38 Identities = 602/925 (65%), Gaps = 22/925 (2%) Strand=Plus/Minus Query 77688 GCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGA 77747 || ||||| || || || | ||||| ||| | || | || || ||| ||| ||| Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 77748 TTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG-CATGAGTCCTT 77806 ||| || |||||||| || || || | || |||||||| |||| | || ||| || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTG-GTCTTT 1904 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 77866 || || || | ||| | || |||||||| || | || ||||| | | |||||| Sbjct 1903 GTAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTT 1844 Query 77867 TCTAGCTTTTATCATAGATTTGTATCG----CCTCTCTCTTTCATA--TTGAGTATATAG 77920 | ||| || ||||| |||| | ||| ||||| |||| || ||| | || Sbjct 1843 TTGAGCCTT---CATAGTTTTGCGGCCAAGTCCTTGCTCTT-CATACTTTTGGTAGAGAG 1788 Query 77921 CCGTTCAAATTCATCTCCCCAAACATCATCCA-ATCCAGGGCATTCATTTGGGCACATCA 77979 | |||||| ||||| || |||| |||| | | || ||| |||||| || || | | Sbjct 1787 C--TTCAAACTCATCGCCATAAACGTCATAAAGACCCTTGGC-TTCATTGGGACAGAAAA 1731 Query 77980 ATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAA 78039 | |||||| |||| || | |||| ||||| || | |||||| | ||||||| | | Sbjct 1730 GAGTCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCA 1671 Query 78040 TAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACT 78099 | || | || || | || || ||||| || || ||||||| | | | |||| | | Sbjct 1670 TGAACAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGT 1611 Query 78100 CCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTAC 78159 | | ||||||| ||||| ||||| ||||| || || | || || || || Sbjct 1610 CAAAGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCTCTTTCCAC 1551 Query 78160 CTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 78219 ||||||| |||| |||||| || || | ||| | ||||| | ||| |||| | || | Sbjct 1550 CTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTCCAT 1491 Query 78220 TAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATA 78279 | || |||||| || || || || ||||| | || | || || || | | Sbjct 1490 TTGAGTATCCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGAACTGCAA 1431 Query 78280 TCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTT--TCAATGTATCGTAGAT 78337 |||| ||| || || ||||||| || ||| || ||||| | | ||||||||||| Sbjct 1430 GTCCTACTCCACCAGCACTCTTAGAAAT--GAGTGCTACGTTCTTGAGAGTATCGTAGAT 1373 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 78397 ||| | ||| ||| ||| |||| | || | |||||| ||||||| | | Sbjct 1372 ACCGTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAGGCTTGGG 1313 Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 || || || || || | || || | ||||| || ||||| || | || || Sbjct 1312 GGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGAGGTT 1253 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 || || ||||| ||||| || | || | ||| || |||||||| | || | | | Sbjct 1252 ATAAGTCTCAATGGCTGAGTCAACATCTTCCTTG-TGGATTCCTACTGAGACTCTGAGGA 1194 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| ||||| ||||||||||| |||| || | ||| | |||||| || || | Sbjct 1193 GCATGTGCTGGGGTCTTTCAACGATCTTGCCGTTGACTTTGAGCAAGTAGGAGCGCTCAA 1134 Query 78577 AAGTTTTAAAACCAAAATAGTTGTA 78601 || || || || || |||| ||| Sbjct 1133 GGGTCTTGAATCCGAAGTAGTCGTA 1109 >seq12789 Length=2278 Score = 132 bits (146), Expect = 7e-26 Identities = 369/561 (66%), Gaps = 4/561 (1%) Strand=Plus/Plus Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || || ||||| || || || || |||||||| || |||||||| |||||||| || || Sbjct 808 ATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATG 867 Query 48237 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCT 48296 | |||||| || || ||||| ||||| || || || || || || ||||||||| Sbjct 868 GAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCG 927 Query 48297 CCGTAACTGGCT-TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACA 48355 || || ||| | || || ||||| || | ||||||||||||||||| | || Sbjct 928 GCG-AAGGCGCTGTGGTCGTTGATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACGAC 986 Query 48356 AGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGT 48415 || || || | |||| || ||||| || | ||| |||| ||| | | || Sbjct 987 GGGGATGTTTGCAGTAGCCTTGAAGAGGAACTCTTTCTCATGAGGGTCTGAGATGAGGGT 1046 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475 ||| || | || || | |||||||| || || || || ||| || || || || Sbjct 1047 ATCGATCAGGAGTGAGTAGGTCTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATA 1106 Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATT 48535 || || | || || | | ||| | ||| || || || | || | ||||| || Sbjct 1107 GAAGCAGCGAGCCTCGGGCACCTGAATCTCAGTGCAGAACTTCTGGGCGAGGTTCTCGTT 1166 Query 48536 TACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTT 48595 || || || || ||||| || || || | || || || | ||| | |||||||| Sbjct 1167 GACGATACCGTCGGAGGCAGCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGTT 1226 Query 48596 GGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 | | | || | |||||| || | ||| | | | || | ||| |||| |||||| Sbjct 1227 GTCATTAAGGCGCTCCCAGTCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCA 1286 Query 48656 AAATGATGCC-TCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAA 48714 |||| ||| |||| | || ||||| ||||| || || |||| | ||| |||| | Sbjct 1287 GAATGCAGCCATCTG-GTCCTTGTACATTTTCCAGATGTCGTTGTACTTGATGGGGAGGA 1345 Query 48715 TAACAAATCTATTTGGATTTT 48735 | ||||| | || || |||| Sbjct 1346 TGACAAAGCGGTTAGGGTTTT 1366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694449814344160