Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8878 122 1e-22 seq12789 98.7 1e-15 >seq8878 Length=3384 Score = 122 bits (134), Expect = 1e-22 Identities = 588/922 (64%), Gaps = 16/922 (2%) Strand=Plus/Minus Query 76283 GCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGA 76342 || ||||| || || || | ||||| |||| | || | || || || || ||| Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 76343 TTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA-CATGAGTCCTT 76401 ||| || ||||||||||||||| || | || |||||||| || | || ||| || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTG-GTCTTT 1904 Query 76402 ATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 76461 || || | | ||| ||||||||||||| || | || ||||| | | |||||| Sbjct 1903 GTAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTT 1844 Query 76462 TCTAGCTTTTATTATAGATTTGTATCGC--TTCTCTCT-TTCATATTGT--GTATATAAC 76516 | ||| || || || |||| | | || || |||||| | | ||| | | | Sbjct 1843 TTGAGCCTTCAT---AGTTTTGCGGCCAAGTCCTTGCTCTTCATACTTTTGGTAGAGAGC 1787 Query 76517 CGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAAT 76576 |||||| ||||| || |||| |||| | ||| |||||| ||||| | | Sbjct 1786 --TTCAAACTCATCGCCATAAACGTCATAAAGACCCTTGGCTTCATTGGGACAGAAAAGA 1729 Query 76577 GACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 76636 | ||| || |||| || | || | ||||| || | |||||| | ||||||| | || Sbjct 1728 GTCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATG 1669 Query 76637 AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCC 76696 || | || || | || | ||||| || || ||||||| | | | || | || Sbjct 1668 AACAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCA 1609 Query 76697 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCT 76756 | ||||||| ||||| ||||| ||||| || || | |||| || || |||| Sbjct 1608 AAGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCTCTTTCCACCT 1549 Query 76757 CCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTA 76816 ||||| |||| |||||| || || | ||| | ||||| | ||| |||| | || || Sbjct 1548 CCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTCCATTT 1489 Query 76817 GATGTA-CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAG 76875 || ||| ||||| || || || || ||||| || | || || || | || Sbjct 1488 GA-GTATCCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGAACTGCAAG 1430 Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 |||| ||| || || | ||||| || || || | || | || || ||||| || Sbjct 1429 TCCTACTCCACCAGCACTCTTAGAAATGAGTGCTACGTTCTTGAGAGTATCGTAGATACC 1370 Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995 | ||| || ||| |||| | || | |||||| ||||||| | | || Sbjct 1369 GTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAGGCTTGGGGGT 1310 Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTA 77055 || || || || | || || | |||||||||||||| || | || || || Sbjct 1309 ACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGAGGTTATA 1250 Query 77056 TGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACA 77114 || ||||| ||| || | ||| | ||| || |||||||| | ||| | | | || Sbjct 1249 AGTCTCAATGGCTGAGTCAACATCTTCCTTG-TGGATTCCTACTGAGACTCTGAGGAGCA 1191 Query 77115 TATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG 77174 | ||||| |||| ||| || |||| || | ||| | |||||| || || | | Sbjct 1190 TGTGCTGGGGTCTTTCAACGATCTTGCCGTTGACTTTGAGCAAGTAGGAGCGCTCAAGGG 1131 Query 77175 TTTTAAAACCAAAATAGTTGTA 77196 | || || || || |||| ||| Sbjct 1130 TCTTGAATCCGAAGTAGTCGTA 1109 >seq12789 Length=2278 Score = 98.7 bits (108), Expect = 1e-15 Identities = 362/563 (64%), Gaps = 8/563 (1%) Strand=Plus/Plus Query 46666 ATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATA 46725 || || ||||| || || || || || ||||| || ||||| || |||||||| || || Sbjct 808 ATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATG 867 Query 46726 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCT 46785 | |||||| || || ||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 868 GAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCG 927 Query 46786 CCGTA---ACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACA 46842 || | ||| || || ||||| | |||||||||||||||| || | || Sbjct 928 GCGAAGGCGCTGTGGTCGTT---GATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACG 984 Query 46843 CAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATAT 46902 || || || | |||| || ||||| || | ||| |||| | ||| | Sbjct 985 ACGGGGATGTTTGCAGTAGCCTTGAAGAGGAACTCTTTCTCATGAGGGTCTGAGATGAGG 1044 Query 46903 GTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCG 46962 ||||| || | || || | || || || ||||| || || ||| || || || Sbjct 1045 GTATCGATCAGGAGTGAGTAGGTCTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCA 1104 Query 46963 TAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCA 47022 || || || | || || | | ||| | ||| || || || | | | ||||| Sbjct 1105 TAGAAGCAGCGAGCCTCGGGCACCTGAATCTCAGTGCAGAACTTCTGGGCGAGGTTCTCG 1164 Query 47023 TTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 47082 || || || || || ||||| || || || | || || || | ||| | ||||| Sbjct 1165 TTGACGATACCGTCGGAGGCAGCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCG 1224 Query 47083 TCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 47142 | | | | || | |||||| || | ||| | | | || | ||| |||| |||| Sbjct 1225 TTGTCATTAAGGCGCTCCCAGTCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTC 1284 Query 47143 CAGAATGACGCC-TCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAA 47201 ||||||| ||| |||| | || ||||| ||||| || || || | ||| || | Sbjct 1285 CAGAATGCAGCCATCTG-GTCCTTGTACATTTTCCAGATGTCGTTGTACTTGATGGGGAG 1343 Query 47202 AATAACAAATCTATTTGGATTTT 47224 || ||||| | || || |||| Sbjct 1344 GATGACAAAGCGGTTAGGGTTTT 1366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712709656342080