Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq24216 118 7e-22 >seq24216 Length=1664 Score = 118 bits (130), Expect = 7e-22 Identities = 186/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 96749 CCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTA 96808 ||||| || ||||| ||||| || |||||||| | ||| || |||| || || | || | Sbjct 1213 CCAATAGGACCATTGCGTTGTTTACCGATAATAATCTCAGCGGTGCCTTT-ATCTGGCGA 1155 Query 96809 -TCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAAT 96867 || |||| |||||| | |||||||| | ||||| || | ||| || || |||||||| Sbjct 1154 ATCAGGGTTATAAACCTGATCGCGATAAATAAACAAAATAACGTCCGCATCTTGCTCAAT 1095 Query 96868 TGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGA 96927 ||||||||||| || |||||||| | || || || || | | || ||||| | || Sbjct 1094 CGCTCCTGATTCGCGCAAATCTGACATAACAGGACGCTTATTGGGGCGTTGTTCCAATGA 1035 Query 96928 TCGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAG 96987 || || || || ||||| || | || || ||||| |||||||| | |||| Sbjct 1034 ACGGTTTAGCTGCGACAAAGCAATTACTGGACAACCCAATTCTTTCGCCAAGCCTTTCAT 975 Query 96988 TGAGCGAGAAATCTCGGCAATTTC 97011 || |||||||| | ||| || Sbjct 974 ACTTCGTGAAATCTCTGAAATCTC 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330797495959354