Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq24649 138 4e-28 >seq24649 Length=1633 Score = 138 bits (152), Expect = 4e-28 Identities = 279/406 (69%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 51924 ATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGG 51983 |||||||| || ||||| |||||||||||| | | ||||| || ||||| |||||| Sbjct 1498 ATTTGGGATGATTGGGCTGATGAAAATGGTGATTTAGGTCCAGTCTATGGGTCTCAGTGG 1439 Query 51984 CGTAGTTGGGA--TGCTGG-TGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAA 52040 ||||||||| ||| |||||| | ||| ||||| || || | | | Sbjct 1438 CGTAGTTGGCCATTGCCAAATGGCGGTCATGTC---GATCAAATTACACAACTGATTGCA 1382 Query 52041 TCAATTAAGAACGATCCT-GATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGA 52099 |||||| | ||| || || | |||| | || || |||||||||||||||| || Sbjct 1381 CAAATTAA-ATCGAACCCAGACTCTAGACGCCTGATCGTGTCTGCTTGGAATGTGGCAGA 1323 Query 52100 TTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGG 52159 | ||||| | || | ||||||||| || | ||||| || ||||| || || || Sbjct 1322 AATTCCAAATATGAAGCTGCCCCCCTGCCATGCATTTTTCCAGTTTTATGTTGCCGATGG 1263 Query 52160 TAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTT-CTTGGGCGTTCCGTTTA 52218 ||||| || ||||| | ||||| || ||| || || || |||||| ||||| || | Sbjct 1262 CAAGCTGTCATGCCAGCTATATCAACGCAGTGCAGATATTTTTCTTGGG-GTTCCATTCA 1204 Query 52219 ACATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGTTGGCCTTGATGTTG 52278 | || || |||| | || |||| ||| || |||| | | | || || | |||| Sbjct 1203 ATATCGCATCCTATGCTTTATTGACACATATGGTTGCACAACAAACTGATCTGCAAGTTG 1144 Query 52279 GTGAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCA 52324 | || || |||||||||||||||||| ||| | |||| ||| || Sbjct 1143 GGGACTTTATTTGGACTGGTGGCGACTGTCATTTATACAGCAATCA 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190039070881590