Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_031245.1 Length=221908 Score E Sequences producing significant alignments: (Bits) Value seq21304 87.8 3e-12 >seq21304 Length=1801 Score = 87.8 bits (96), Expect = 3e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 131502 AAAGCTATTATTCC-AGCAGCTGGATTAGGTACTAGATTCCTTCCAGCTACAAAAGCTCA 131560 |||| | |||||| || || || || |||| | |||| | ||||| ||||| || || Sbjct 1529 AAAGGCAGTATTCCCAGTCGCAGGTTTTGGTAGTCGATTTTTGCCAGCGACAAAGGCGCA 1588 Query 131561 GCCTAAAGAAATGTTATCCTTGATCGATCGACCTGTTATTGAATATATAGTTAGGGAAAT 131620 || ||||||||| |||| || | ||| ||| | ||| | ||| || ||| Sbjct 1589 ACCAAAAGAAATGCTATCAGTGGTAGATAAGCCTTTGATTCAGTATGCGGTGGAAGAAGC 1648 Query 131621 TGTTGAGTCTGGTATCACTGAAATCCTGATAATCACTGGACGTGACAAACGTTCCATTGA 131680 ||||| | ||||| || ||||| || | ||||| ||||| |||||||| | ||||| Sbjct 1649 AGTTGAAGCCGGTATTACGGAAATGGTGTTTATCACCGGACGCAACAAACGTGCGATTGA 1708 Query 131681 GAATCACTTCGAC 131693 ||||||||||| Sbjct 1709 AGATCACTTCGAC 1721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709753788436320