Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq18359 140 7e-28 seq7629 129 1e-24 seq7630 125 2e-23 >seq18359 Length=859 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||||||||| || || ||||||||||| ||||| ||||| || ||| | |||| Sbjct 333 CTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTT 392 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || || ||||| |||||||| ||||| || || | | |||||| Sbjct 393 CTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCC 452 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| || || ||| ||| |||| | | |||| || || || || || Sbjct 453 TCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGT 512 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || ||||||||||| || || | |||||| Sbjct 513 GTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 Score = 131 bits (144), Expect = 4e-25 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | ||||||||| ||||| || || |||||||| ||| ||| ||||| || Sbjct 566 TCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTGCC 625 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || ||||| |||||||| || || ||||| || || | | ||| || ||| Sbjct 626 GTCTTCAAGTTGCTTT--CCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCC 683 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| ||||| |||| | | |||| || ||| || || | |||| Sbjct 684 TTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTA 743 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||||||| | ||||| Sbjct 744 ATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq7629 Length=3052 Score = 129 bits (142), Expect = 1e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||||||||| || | || || || ||||| ||||||||||||||||| | || ||| Sbjct 2728 CTGAGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGACAAGGTT 2787 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| | || || || ||||| || ||||| || || | | ||| ||| Sbjct 2788 CTACCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGGATACCT 2847 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || || || | || | | |||| ||| ||| || ||||| Sbjct 2848 TCCTTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACATCAAGG 2907 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || || | |||||| ||||||| || |||||| Sbjct 2908 GTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACATTTT 2951 >seq7630 Length=872 Score = 125 bits (138), Expect = 2e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||||||| || | ||||| |||||||| || ||||||||||||||| | ||| Sbjct 504 CTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTT 563 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || || || || ||||| || ||||| ||||| | | |||||| Sbjct 564 CTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCC 623 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| |||| | | |||| || ||| || || | Sbjct 624 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACGTCCAAG 683 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || ||||| ||||||| ||||| || Sbjct 684 GTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTT 727 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| ||||| | || || || ||||| || || |||||||| || | | |||| Sbjct 276 CTGAGTCTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTT 335 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || || || ||||||||||| || || || || | | || ||| Sbjct 336 CTTCCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCT 395 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || || |||| | | | ||||| ||| || |||||| Sbjct 396 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAACATCAAGA 455 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| ||||||| ||||| Sbjct 456 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153447979225949