Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7629 132 1e-25 seq24467 129 1e-24 seq18359 122 2e-22 seq7630 120 6e-22 seq24245 114 3e-20 seq20592 87.8 4e-12 >seq7629 Length=3052 Score = 132 bits (146), Expect = 1e-25 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || |||||||||||||| |||| |||| || | || || || | | || || ||||| Sbjct 2758 TCCTTTTGGATGTTGTAATCAGACAAG-GTTCTACCGTCTTCCAACTACTTTCCAGCAAA 2816 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | ||||| ||| || ||||| |||||||| || ||||| || || ||| | Sbjct 2817 GATGAGTCTCTGTTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTT 2876 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| |||| || || || || ||||| |||||||| ||||||||||| || Sbjct 2877 TTCGATGGTGTCGGAAGGCTCCACATCAAGGGTGATAGTCTTACCAGTCAAAGTCTTGAC 2936 Query 283088 GAATATCTGCATTTT 283102 ||| |||| |||||| Sbjct 2937 GAAGATCTACATTTT 2951 >seq24467 Length=4469 Score = 129 bits (142), Expect = 1e-24 Identities = 207/289 (72%), Gaps = 9/289 (3%) Strand=Plus/Plus Query 301407 CTTAAAGATAGCGATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAG 301466 || |||| || | ||||| ||| | || || || ||||| || |||||||| || ||||| Sbjct 384 CTCAAAGTTACC-ATGCTCAAACTCGATCCTTACATCAATGTGGATCCGGGTACTATGAG 442 Query 301467 CCCGACTCAACATGGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCT 301526 ||| ||||| || ||||||||||| || ||||| || ||||| || ||| ||||| | Sbjct 443 CCCATTCCAACACGGTGAAGTGTTCGTTACCGATGACGGCGCTGAGACGGATTTGGATTT 502 Query 301527 GGGGCACTACGAACGTTTCACTTCATTAACCCT--TAAGCGTGAAAGTAATTTTACGACT 301584 ||| ||||| |||||||||| || | | || ||||| ||| || ||||| Sbjct 503 GGGTCACTATGAACGTTTCATCTCTGCGAAGATGAAAAAAGTGAA--TAACTTCACGACC 560 Query 301585 GGCCAAGTTTATTTAAAAGTTA-TCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGAC 301643 |||||| ||||| | || | ||| ||| || || ||| ||| | || || || Sbjct 561 GGCCAAATTTATGAATCGGTGATTCGTAAA-GAGCGTCGTGGTGAATATTTGGGCAAAAC 619 Query 301644 GGTGCAAGTTGTTCCCCACATCACCGATGAAATCAAAAGAAGA-ATTCA 301691 || |||||| |||| ||||| || |||||||| ||||| | ||||| Sbjct 620 TGTTCAAGTTATTCCACACATTACGAATGAAATC-CAAGAATACATTCA 667 >seq18359 Length=859 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| ||||| ||||| || || | ||||| || || | || ||||||||| Sbjct 363 TCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAAG 422 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||||| || || || ||||| |||||||||||||| ||||| || | Sbjct 423 ATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATTC 482 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | |||||| ||||| ||||| ||||| || || | |||||| || Sbjct 483 TCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACA 542 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 543 AAAATTTGCATT 554 Score = 96.9 bits (106), Expect = 7e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC--AAGCGTGCGGCCAT 282945 || |||| ||| | ||| || || || ||||||||||| || ||| || | ||| | Sbjct 570 AGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTC-GCTTAAG-GTTCTGCCGT 627 Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 | || ||||| || ||||| || |||| | ||||| || || || |||||||||| Sbjct 628 CTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCCTTGT 687 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | ||||| || || || ||| | || || ||||| || | || || || | ||| || | Sbjct 688 CCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTAATGG 747 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || || | ||||| ||||| || ||||| Sbjct 748 TCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq7630 Length=872 Score = 120 bits (132), Expect = 6e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||| ||| || | || || || || || || || || ||| Sbjct 306 TCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCTGCGAAG 365 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || |||||||| |||||||| |||||||| || || ||| | Sbjct 366 ATAAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 425 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || || | || || || |||||||| ||||| || || | ||||| ||| Sbjct 426 TCGATGGTATCTGAGGGCTCAACATCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACG 485 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 486 AAGATTTGCAT 496 Score = 116 bits (128), Expect = 8e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || || || | ||| || || ||||| || || |||||| Sbjct 534 TCCTTCTGGATGTTGTAATCGCTGAGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAG 593 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||||| || || |||||||||||||||||||| || || || | Sbjct 594 ATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTC 653 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || | ||||| ||||| || || | ||||||||| Sbjct 654 TCGATGGTGTCGGATGGCTCAACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACG 713 Query 283089 AATATCTGCATTTT 283102 || || ||||| || Sbjct 714 AAGATTTGCATGTT 727 >seq24245 Length=617 Score = 114 bits (126), Expect = 3e-20 Identities = 234/345 (68%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 43979 TTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAA 44038 ||| ||||||||||||||| ||| ||| ||| || || |||| |||| ||| ||| Sbjct 170 TTTACCAAGCGTCGACATCCGAGATGTTCGGGAAAGTACAGGCTGTTCCGCAAGTTGAAT 229 Query 44039 GGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTT 44098 || ||||||||||| || || || |||||||| || || | |||||| ||||||| Sbjct 230 CAACACCGTTTTATCCTCGTAGCCCGTATGGTGTCGCAAAATTGTATGCCCATTGGATGA 289 Query 44099 GTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACG 44158 | |||||||| || || ||||| || || | ||||| | |||| || ||||| | Sbjct 290 CGATTAATTATCGTGAATCTTATGGAATCTTTGCTTGTAGTGGTATTTTGTTTAATCATG 349 Query 44159 AAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATA 44218 || ||| | || | | || ||||| || || || || | | || || || | Sbjct 350 AATCTCCGTTGCGTGGGCGCGAATTTGTGACGCGCAAGATTACTGATTCAGTCGCTAA-A 408 Query 44219 TTTTCAACGGGAC-AGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGG 44277 || | |||| | | | ||| | | || || || || || | ||| | || ||| Sbjct 409 ATTAAATTAGGACAATTAGATTGCCTTGAACTGGGCAATATGGATGCGAAACGCGACTGG 468 Query 44278 GGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAA 44322 || ||||| || ||||| |||| ||||||| ||||||||| Sbjct 469 GGCTATGCGAAAGAGTATGTCGAAGGTATGTGGCGCATGTTGCAA 513 >seq20592 Length=348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || || || | |||||| || || |||||||| | |||||| || || ||||| ||| Sbjct 14 CCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGGATACCTTCC 73 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| || || || | ||||| || || || | || || || | || Sbjct 74 TTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAACGTCTAAGGTA 133 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| || | || |||||||| || | ||| || Sbjct 134 ATAGTTTTACCAGTGAGTGTTTTAACGAAGATTTACATGTT 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046400979265226