Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7630 127 1e-24 seq7629 125 5e-24 seq18359 114 9e-21 >seq7630 Length=872 Score = 127 bits (140), Expect = 1e-24 Identities = 174/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||| | ||||| |||||| || |||||| ||||||||||| Sbjct 491 TTGCATACCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTA 550 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||| || || |||| || || ||||| || |||||||| | | ||| || Sbjct 551 ATCGCTGAG--GGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGG 608 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | || ||||| || ||||| ||| | | | |||||||||| Sbjct 609 TCGGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGAT 668 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || |||| || || |||||||| || |||||||| ||||||||||||||| || Sbjct 669 GGCTCAACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTTG 728 Query 44342 T 44342 | Sbjct 729 T 729 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169 || ||||| ||||||| |||| ||| || || |||||| || |||||||| || | Sbjct 270 CCACCTCTGAGTCTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAA 329 Query 44170 -GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| | |||| || |||||||| || || ||||| | | || ||||| | | Sbjct 330 AGAGTT--CTTCCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGG 387 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | ||||||||| ||| ||||| ||||| |||| | ||||| || | || || Sbjct 388 GAATACCTTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTATCTGAGGGCTCA 446 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | || || ||||| || ||||||||||| |||||||||||||| Sbjct 447 ACATCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 496 >seq7629 Length=3052 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGC 44169 || ||||| ||||| | ||||| ||| || ||| ||||||||||||||||||||| | | Sbjct 2722 CCACCTCTGAGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGAC 2781 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | | |||| |||| || ||| || |||||||| | | ||| ||||| | ||| Sbjct 2782 AAGGT-TCTACCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGG 2840 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||||||||| ||| ||||| ||||| || | |||||||||| | ||||| Sbjct 2841 GATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCAC 2900 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| || || | ||||| |||||||| | ||| Sbjct 2901 ATCAAGGGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACAT 2948 >seq18359 Length=859 Score = 114 bits (126), Expect = 9e-21 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| | ||| | |||| ||||| ||| |||||| || |||||||| Sbjct 548 TTGCATTCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTA 607 Query 44164 ATCGGCGA-GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 ||| | | | || |||| || || ||||| ||||| || |||| | ||| |||| Sbjct 608 GTCGCTTAAGGTTCTGC-CGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGAT 666 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | || | || ||||| ||| || || ||| | |||| | |||||||| | Sbjct 667 CGGGTGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTGAC-GTTCTCAATGGTGTCAGAT 725 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| ||||| |||||||| ||||||||||||||||| |||||||| Sbjct 726 GGCTCAACGTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG--G 44168 || ||||| ||||| | || ||||| || || ||||||||| ||||| || ||| | Sbjct 327 CCACCTCTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTG 386 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| | | || || |||| ||| ||||||||||| | | ||| ||||| | | Sbjct 387 AGAGTT--CTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTG 444 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | || || || || ||||| |||| | ||| | |||||||||| || ||| Sbjct 445 GGATTCCCTCTTTGTCTTGGATCTT-GGCTTTCACATTCTCGATGGTGTCGGAGGGTTCG 503 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | || || |||||||| ||||| ||||| || || |||||||| Sbjct 504 ACGTCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCAT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359879754588123