Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18359 179 9e-40 seq7630 161 2e-34 seq7629 136 1e-26 seq18358 123 6e-23 >seq18359 Length=859 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || |||||||| ||||| || ||||| ||||| || ||| ||| ||| Sbjct 550 CAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTCCGAC 491 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| || |||||||| |||||||| || || || || Sbjct 490 ACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAG 431 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| |||||||| |||| |||||||| || ||||| ||| |||||| | Sbjct 430 AGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAACATT 371 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || || || || | ||||||||| Sbjct 370 CAAAAGGAGTCTACTCTCCACCTAGTCCTCAGACTCAGA 332 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||| ||||| || || || | || || || || ||| Sbjct 778 CAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCTGAC 719 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || || |||||||| || || ||||| || || || || Sbjct 718 ACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAACAG 659 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || || ||||| || || || | ||| || ||| | Sbjct 658 AGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAACATT 599 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||| | ||| | ||| | ||| Sbjct 598 CAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGA 560 >seq7630 Length=872 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||| || || || || |||||| Sbjct 493 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCTCAGAT 434 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| ||||| || || || || || ||| Sbjct 433 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAACAA 374 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| || || ||||| ||||| ||||| |||||| | || || ||| | Sbjct 373 AGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAACATT 314 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || ||||| || || | || ||||||||||| Sbjct 313 CAGAAGGAGTCAACCCTCCACTTGGTCCTGAGACTCAGA 275 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || |||||| | || || || || ||| Sbjct 721 CAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTGAGCCATCCGAC 662 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 661 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAACAG 602 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||| || || || || |||||| ||| || Sbjct 601 AGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGCGATTACAACATC 542 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || || | || | ||||| ||| Sbjct 541 CAGAAGGAGTCTACCCTTCACTTGGTGCTCAGACTTAGA 503 >seq7629 Length=3052 Score = 136 bits (150), Expect = 1e-26 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || |||||||| || ||||| || |||||| Sbjct 2942 ATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCCTTCCGACACC 2883 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || |||||||||||||| ||||| |||||||| || || || || Sbjct 2882 ATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAACAGAGA 2823 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCA 178105 || ||||| || ||||| || | ||||| || || || |||| | ||||| ||| |||| Sbjct 2822 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAAC-CTTGTCTGATTACAACATCCA 2764 Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| || || || || || | || | ||||||||| Sbjct 2763 AAAGGAGTCCACCCTCCACTTGGTGCTCAGACTCAGA 2727 >seq18358 Length=408 Score = 123 bits (136), Expect = 6e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| ||||| ||||| ||||| || ||||||||||| || || || |||| Sbjct 264 AAATTTTCGTCAAAACCCTCACTGGAAAGACCATCACCCTCGATGTTGAGCCATCTGACA 323 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || || ||||| |||||||||||||| ||||| ||||| || ||||| || Sbjct 324 CCATTGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCACCTGACCAACAGA 383 Query 178045 GACTTATCTTCGCCGGAAAACAG 178067 |||| || ||||| ||||| ||| Sbjct 384 GACTCATTTTCGCTGGAAAGCAG 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203342252255486