Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq18359 104 2e-17 >seq18359 Length=859 Score = 104 bits (114), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| ||||||||||||||| |||||| | ||| | |||| || Sbjct 573 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTGCCGTCTTCA 632 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| |||||||| ||||| | |||||| || | || | || |||||||||| | Sbjct 633 AGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCCTTGTCCTGG 692 Query 41774 ATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||||| ||| |||| | || ||||| | ||| || |||| || || || Sbjct 693 ATTTTAGCCTT----GACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTAATGGT 748 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| |||||||| ||||| Sbjct 749 CTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462158264442800