Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 8e-16 >seq9 Length=1304334 Score = 98.7 bits (108), Expect = 8e-16 Identities = 333/514 (65%), Gaps = 10/514 (2%) Strand=Plus/Minus Query 18805 TTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATT 18864 |||| |||||| | |||||||||||||| || ||||||||||| || | || |||| Sbjct 106315 TTTATGGCTTCTAATGGAGACATTTTGGTGCAGAATATAAAGATATGCATACTAATTATT 106256 Query 18865 TACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAA 18924 | ||||| | || |||| | | | || | || || || | ||| ||||| | Sbjct 106255 AAGGATAAGGAGTAGACTAGCTATAGGATTTAATTAACACCATAAAGAAAAATCCAGATA 106196 Query 18925 GCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTC 18984 | || |||||||||| | |||||| || ||| | || || |||| |||||||| Sbjct 106195 GTAGAAGAATGATTATGAGTGCATGGAATGTGAAAGATCTTCCATTGATGGCACTACCTC 106136 Query 18985 CATGTCACACGTTAT--GTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATA 19042 | || ||||| || || | ||||| || | ||| ||||| |||| | || Sbjct 106135 CCTG--CCACGTAATGAGTTAATTTTATGTAAATGATGGTAAATTAAGCTGCATGATGTA 106078 Query 19043 CCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCT 19102 | ||||| | |||||||| | || | || || || |||||| | ||||| | || Sbjct 106077 TTAAAGATCATGTGATATGGGATTAGGAATTCCATTTAATATTGCTAGTTATGCTTTGCT 106018 Query 19103 TACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGG 19162 || | || | || ||| | ||| | | ||| ||||| || | ||| | || Sbjct 106017 AACTCATATGATTGCACATATAACATAATTGAAAGTAGGAGAATTCGTCCATGTTTTAGG 105958 Query 19163 GGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCC 19222 ||||| ||| |||||| || ||| | || |||||| | | |||| || | || Sbjct 105957 TGATGCTCATGTTTACTCAAACCATGTTGAATAATTAAAAATTTAACTAGAAAGAACTCC 105898 Query 19223 AAAACCTTTTCCTTGCCTTAAAATTATT--CGAAATGTAA--CAGAT--ATAAACGACTT 19276 | || || ||| | | ||||||| | ||| | ||| | || ||| | || || Sbjct 105897 TTATCCCTTCCCTATCTTGAAAATTAATAACGATAAATAATTTAAATCAATAGAAGATTT 105838 Query 19277 TAAATGGGACGATTTTCAGCTTGATGGATATAAT 19310 ||| | || ||||| | ||| |||||| ||| Sbjct 105837 TAATTTTGAAGATTTCGAACTTATTGGATACAAT 105804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399502417589625