Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 201 1e-46 seq28 149 7e-31 >seq2 Length=2195051 Score = 201 bits (222), Expect = 1e-46 Identities = 417/621 (67%), Gaps = 0/621 (0%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| || || |||||||||| | |||||| ||||||| |||||||| | | Sbjct 428850 TTCAAATTCATCACCCCAAACATCAGGAAGTCCAGGGCATTCATTAGGACACATAAGAGT 428791 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| | ||| ||| | | |||| ||||| || ||||| ||||||||||| || | || Sbjct 428790 CCATTTTCCATCAGCAATGACTCTCTTCATGAAAAGATCGGGAATCCAAAGTGCAAAGAA 428731 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || |||||| | ||| | ||| || || || |||||| || | | ||||| | | Sbjct 428730 TAAATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCTTCTTCAACTAAAGGAAGTCGAA 428671 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 || |||||||||||| ||||| ||||| | || | || | ||| || || Sbjct 428670 AACATCAGAATGCCAAGGTTCTAAGTAAACGGCAAAGGAACCCTTTCTCTTGCCACCACC 428611 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||||| | |||||||| || | ||| | || | | ||| |||| || ||||| || Sbjct 428610 TTGATCAACATATCTAGCAGTATCATTGAAGACACGGAGCATAGGAACAAGTCCATTAGA 428551 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 |||||| || || ||||| || | || || | |||||| || || ||||| Sbjct 428550 AATACCATTTGTACCTCTAATATAACTATCTCTAGCTCTGATATTATGAACGGAAAGACC 428491 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 || || ||||| | ||||||||||| || ||| | || | || ||||| || || || Sbjct 428490 AATACCACCTGCACTCTTAGAGATTAAAGCACATTGCTTAAGAGTGTCATAAATACCGTC 428431 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429 ||| ||| | ||| | ||||| ||||| ||| ||||| | | ||| || Sbjct 428430 TATGGAATCTGCTTACATTTGAAGTAAGAAACAACTACTCATTTAGGGCTTGGGAGTACC 428371 Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489 | ||| || | ||||||| ||| || || ||||| |||||| | || ||| || || Sbjct 428370 TGAATTGAAAAGAGTAGGAGTAGCATGAGTGAACCACTTTTCACTCATTAAATTATAAGT 428311 Query 54490 CTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 54549 || || || | ||| | | |||||| || | | || | ||||||||| | Sbjct 428310 ACGGAAGGCACTTTCCAAATCTCTCTTATGAATACCAATAGAAACTCTCATTAACATTTA 428251 Query 54550 CTGAGGTCTTTCAACGATCTT 54570 |||||||||||| | || || Sbjct 428250 TTGAGGTCTTTCAGCAATTTT 428230 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 |||||| || || || | |||| |||||||||||| |||||||||||||| |||| || Sbjct 429426 AATAAAGGCATCAGCAAGACCTTAAACACCAATACCAATAGGTCTATGTCTAATATTTGA 429367 Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 53618 ||| ||||||||||| ||| |||||||| ||| |||| Sbjct 429366 CTTTTTAGCTTCTGGAACAGGGTAATAATTTTCATCAATAA 429326 >seq28 Length=897071 Score = 149 bits (164), Expect = 7e-31 Identities = 494/754 (66%), Gaps = 32/754 (4%) Strand=Plus/Minus Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||||||| ||||||| || || ||||| | | | ||||| | ||||||| ||| Sbjct 62861 ATTCATTCCAATAAGTTCGACGGGGAGAGCTTCTGAGATGAATTCCTTTTCAATATCGAC 62802 Query 24068 CGCGTCTGTTATAATAGATCTTACTG-TTTCTTCACTCGGTGGATACAATAAATGTTTAA 24126 || || | ||||| ||| | |||||||| | |||| | | || ||||| Sbjct 62801 AGCTTCAATGATAATG----TTATAGATTTCTTCATT-GGTGAGTTTATTA----TTTAA 62751 Query 24127 --------ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 24178 | | ||||| |||||||| ||| || || || |||||| ||| | ||| Sbjct 62750 CATGGAGTATAATAAACAAGCGAAATCAGTGTGGAGGCCTTCATCTCTAGAAATGAGTTC 62691 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAA 24237 ||||| || || | |||||||||| |||||| |||||||| || |||| || || Sbjct 62690 ATTGGAGAAGGTCAAACCGGGCATTAAAGAACGCTTCTTAAGCCAGAAGATGGCACAGAA 62631 Query 24238 ATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC 24297 | | ||| ||||| || ||||| | || ||||| ||||| ||||| || | Sbjct 62630 ACTA-CCACTGAAGAATATACCTTCGATGGCAGCAAAAGCAATGAGTCTGGAAGCAAAGT 62572 Query 24298 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC-ACAAGG-CAT 24355 || ||| || |||||||| ||||||| | |||||||| || | ||| || ||| Sbjct 62571 TATCGTTGTTATTGATCCACTTAAGAGCCCATTGAGCCTTCTTGTTAATGACAGGGACAT 62512 Query 24356 TGTCTCTATAG-CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 24414 | | | || | || || || | | |||||| | ||| |||| ||| || |||| Sbjct 62511 TTTG---AGAGGCCTTGAAAAGGAATTCCTTTTCAGTTTCATCCTTAATATAGGTGTCAA 62455 Query 24415 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474 ||||||| || |||| || || || ||||| ||||| |||| || || ||||| Sbjct 62454 TCAAAAGGGAGTAAGTTTCAGAGTGGATATTTTCCATGGCAATTTAGAAACCATAGAAGG 62395 Query 24475 ATCTAGCCTCGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACT 24533 | ||| |||| || || ||||| | ||| ||| || || | |||||| || Sbjct 62394 CACGAGCTTCGGGGATTTGGACTTC-ACACATGAATTACTCGGCGAGGTTTTCAAGGACG 62336 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 24593 || || ||| || || || || || | |||| ||| || || | ||||| Sbjct 62335 ATACCATCAGAAGCAGCGAAGAAAGCAAGGACATATTTAATGAAGTGACGTTCGTTGTCA 62276 Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 || || | |||||| || | ||||| | ||| ||| | ||| || | ||||| || Sbjct 62275 GTAAGACGTTCCCAATCCTTTAAATCTTGATATAAATCAATTTCGTCAGCAGTCCAGAAA 62216 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 24713 || || | | || || ||||| | ||||| | | |||| ||| || || | ||| Sbjct 62215 GAAGCGAGTTCTTTCTTGTACATTTCCCAGACCTTGTTGTATTTAATGGGGAAGAGGACA 62156 Query 24714 AATCTATTTGGATTTT--TTGCAAGGATTGGTTC 24745 || | || || |||| ||| ||||| ||||| Sbjct 62155 AAACGGTTAGGGTTTTCCTTG--AGGATAGGTTC 62124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719188006000