Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq77 113 4e-20 seq41 105 6e-18 seq81 102 7e-17 seq121 96.9 3e-15 seq135 93.3 4e-14 >seq77 Length=437778 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||| |||| ||| | || || ||||| || || ||||| || ||| ||| || | Sbjct 1921 ATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGAAGCCTCT 1862 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || | ||| || ||| ||||| |||||| | || ||| || Sbjct 1861 GACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1802 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||||| ||||| || |||||||| |||||| | |||| | |||| |||||| Sbjct 1801 TAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGACTACAAT 1742 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||||||||||||| | || ||| ||||| |||| || Sbjct 1741 ATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGG 1695 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || ||| || ||||||| || || || || ||| |||| ||| Sbjct 1372 GATAAGGAAGGTATTCCTCCTGATTAATAAAGACTCATTTTCGCTGGTAAATAACTTGAA 1313 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | |||| | | || ||||||||||| |||||||||||||||||| | || || Sbjct 1312 GATGGAAGAACTCTTTCTGACTACAATATTCAAAAGGAATCTACTCTTCACTTAGTATTG 1253 Query 29175 CGATTACGAGGAGG 29188 ||||| ||||||| Sbjct 1252 AGATTAAGAGGAGG 1239 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||| | || ||||| || || ||||| || || |||||||| ||| ||| || | Sbjct 1693 ATGTAGATTTTCATTAAGACTTTGACTGGTAAGACCATTACTCTCGATGTTGAAGCCTCT 1634 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | | ||| || ||| ||||| |||||| | || ||| || Sbjct 1633 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1574 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||||| || || || ||| |||| |||||| | |||| | |||| |||||| Sbjct 1573 TAAAGACTTATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCCGACTACAAT 1514 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||||||||||||| | || | |||| |||| || Sbjct 1513 ATTCAAAAGGAATCTACTCTTCACTTAGTTCTTAGATTGAGAGGTGG 1467 >seq41 Length=642683 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 29061 GAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCC 29120 |||||| | ||| ||| |||||||||||||||| || || || ||||| |||||| | Sbjct 166112 GAAGGTATTCCCCCTGATTAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGC 166171 Query 29121 AAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTA 29180 | |||| | | || || |||||||| |||||||| ||||||||| | || ||| ||||| Sbjct 166172 AGAACTCTTTCTGACTATAATATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTA 166231 Query 29181 CGAGGAGGGTA 29191 |||| || || Sbjct 166232 AGAGGTGGCTA 166242 >seq81 Length=427612 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28960 AAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCG 29019 ||||| |||| ||| | || || || || || || ||||||||| || ||| || Sbjct 245411 AAATGTAAATTTTCGTTAAGACTTTAACTGGTAAGACCATTACCTTAGACGTTGAAGCCT 245352 Query 29020 CAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 29079 | || || | | || | ||| || || ||||| |||||| | ||| ||| Sbjct 245351 CTGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCCGATT 245292 Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 || ||||||||||||| || || || ||||| ||||| || ||| | ||||||||| Sbjct 245291 AATAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCCTTTCCGATTACA 245232 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || ||||||||||| |||||| | || || ||||| |||| || Sbjct 245231 ACATCCAAAAGGAATCTACCCTTCACTTAGTCTTGAGATTAAGAGGTGG 245183 >seq121 Length=281021 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||| || | || || ||||| ||||| || |||||||||||| ||||| | | Sbjct 223905 AATGTAACTTTTTATTAAAACTTTGACAGGTAAAACCATTACCCTTGAAACTAATGGATC 223846 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || ||||| ||| ||| |||||||||||| | || ||| || Sbjct 223845 AGAAACAATAGAAAATGTTAAGGCAAAGATTTAAGATAAAGAAGGTATTCCTCCAGACCA 223786 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 | | |||||||| ||||| || || |||| || ||| | |||||| || || || Sbjct 223785 ATAGAGACTTATTTTTGCTGGTAAGTAACTAGAGGATGGAAGAACTATCTATGACTATAA 223726 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| | || || ||||| |||||| | |||||| | || |||| || Sbjct 223725 TATCTAAAAAGACTCTACCCTTCACTTAGTGTTAAGGCTAAGAGGTGG 223678 >seq135 Length=235529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | ||| |||||| |||||||||||||||| || || |||| ||| Sbjct 235524 GACAAGGAAGGTATTCCCCCCGATCAATAAAGACTTATCTTTGCTGGTAAGTAACTTGAA 235465 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | | || ||||||||| | |||||||| ||||| ||| | || ||| Sbjct 235464 GATGGAAGAACCCTTTCTGACTACAATATTTAAAAGGAATCAACTCTCCACTTAGTTTTA 235405 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 235404 AGATTAAGAGGTGG 235391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428334303387875