Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9 181 2e-40 seq105 143 4e-29 seq77 127 3e-24 seq121 109 8e-19 seq41 98.7 2e-15 seq21 87.8 3e-12 >seq9 Length=1304334 Score = 181 bits (200), Expect = 2e-40 Identities = 400/593 (67%), Gaps = 9/593 (2%) Strand=Plus/Plus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 || ||||| || | || || || | || || | ||||| || |||||||| | | Sbjct 105871 TTAATTTTCAAGATAGGGAAGGGATAAGGAGTTCTTTCTAGTTAAATTTTTAATTATTCA 105930 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 | ||| || || | ||| |||| ||| | | ||| | ||||| | ||| || Sbjct 105931 ACATGGTTTGAGTAAACATGAGCATCACCTAAAACATGGACGAATTCTCCTACTTTCAAT 105990 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 | |||| |||||||||||||| ||| | ||| ||||||||||| ||||||||| | Sbjct 105991 TATGTTATATGTGCAATCATATGAGTTAGCAAAGCATAACTAGCAATATTAAATGGAATT 106050 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATA-TTTATTATTAAT 205559 ||||| ||||||||| |||||||| |||||| |||| | || |||| || | | Sbjct 106051 CCTAATCCCATATCACATGATCTTTAATACAT----CATGCAGCTTAATTTACCATCATT 106106 Query 205560 TACATGAAATTGTA-CAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAG 205618 ||||| ||||| || || || || || |||| |||| | || |||| | Sbjct 106107 TACATAAAATTAACTCATTACG-TGGCAGGGAGGTAGTGCCATCAATGGAAGATCTTTCA 106165 Query 205619 GATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAA 205678 |||||| || | | || || ||||| || || || || ||||| | || || | Sbjct 106166 CATTCCATGCACTCATAATCATTCTTCTACTATCTGGATTTTTCTTTATGGTGTTAATTA 106225 Query 205679 TATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAG 205738 || || | || | ||||| | |||||| |||| |||||| |||||| | Sbjct 106226 AATCCTATAGCTAGTCTACTCCTTATCCTTAATAATTAGTATGCATATCTTTATATTCTG 106285 Query 205739 CACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCAT 205798 |||||||||| | ||||| || |||||||||||||||||||| ||||||| ||||| | Sbjct 106286 CACCAAAATGTCTCCATTAGAAGCCATAAACTGGACCTAAATCGCCTTCTTATCTATTCT 106345 Query 205799 TAAAACCACGtttttttatatattttaatgat-ccattttcatcccaaatatggattcct 205857 ||||||| | | || | | || | | | || ||| | |||||||| | | ||| Sbjct 106346 TAAAACCTAGAGAATCTA-AAAATTCACGGCTACCGTTTCCTTCCCAAATTTTAACACCT 106404 Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTC 205910 || | | |||||||| | ||||| ||| |||||||||| ||||| Sbjct 106405 TTTTCAGTAAGAATATTACTGTTAGTACTTCCTTTGATAAACCATATCAATTC 106457 >seq105 Length=326417 Score = 143 bits (158), Expect = 4e-29 Identities = 219/307 (71%), Gaps = 9/307 (3%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| | || ||| |||| || || ||||| || ||||| ||| | || ||| | | | Sbjct 7793 ATGTAGATTTTTGTAAAAACTCTTACAGGAAAGACTATCACTCTTGATATTAATTCCGCT 7734 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||||| ||| |||||||||| |||||||| || |||||| | Sbjct 7733 GATACCATTGAAAATGTTAAAACTTAAA-TTCAAGATAAGGAAGGTATCCCTCCTGATTA 7675 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 | |||| ||||| ||||||||||| ||| | || ||| | |||| | || ||||| Sbjct 7674 ATAAAGACTTATATTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAA 7615 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 ||| |||||||||| || | || || || ||| | || |||||||| | |||||| Sbjct 7614 TATCTAAAAAGAATCTACCCTTCACTTAGTGTTAAGACTAAGAGGTGGTGGTTAAAATTG 7555 Query 124778 ATAAAAATTGATTGTAAAT----AAATATCACTACAAATAA--TTTTATCTGTTA-tttt 124830 | || ||| ||| ||| |||||| | ||||| |||| | || || |||| Sbjct 7554 AATAAGATTTATTAATAATTTTAAAATATTTAAAATAATAATCTTTTTTATGATATTTTT 7495 Query 124831 tttATAA 124837 ||||||| Sbjct 7494 TTTATAA 7488 Score = 140 bits (154), Expect = 5e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| |||| || || ||||| || ||||| ||| | || ||| | | |||||| ||| Sbjct 8243 TTTGTAAAAACTCTTACAGGAAAGACTATCACTCTTGACATTAATTCCGCTGATACTATT 8184 Query 124608 TCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCT 124666 ||| ||||||| ||| |||||||||| |||||||| || |||||| || |||| || Sbjct 8183 GAAAATGTTAAAACTTAAA-TTCAAGATAAGGAAGGTATCCCTCCTGATTAATAAAGACT 8125 Query 124667 TATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAA 124726 ||||||||||||||| ||| | || ||| | |||| | ||||||||||| |||| Sbjct 8124 TATTTTTGCAGGAAAGCAACTTGAAGATGGAAGAACTATCTCTGATTATAATATCTAAAA 8065 Query 124727 AGAATCAACTTTGCATTTGGTTTT 124750 |||||||||| | ||||| || || Sbjct 8064 AGAATCAACTCTCCATTTAGTATT 8041 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 ||| ||| |||||||| | || ||| |||| || || ||||| ||| |||| | | | Sbjct 8484 TACTATGTAAATATTTGTTAAAACATTAACTGGAAAGACTATTACTCTAGATGTCTAGTC 8425 Query 124595 AAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 || | || ||| ||||||| || || ||||||| |||||||| || |||| Sbjct 8424 TTCAGACTCTATAGAAAATATTAAAACT-AAGATATAAGATAAGGAAGGTATCCCTCCTG 8366 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 || || |||| ||||||||||| || || || | || ||| | |||| | || | Sbjct 8365 ATTAATAAAGACTTATTTTTGCTGGTAAGTAACTCGATGATGGAAGAACTATCTCTGACT 8306 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| ||| ||||||||||| | ||||| ||| | | || |||||||||| Sbjct 8305 ATAACATTTCTAAAGAATCAACACTCCATTTAGTTCTTAGATTGAGAGGTGGTAT 8251 >seq77 Length=437778 Score = 127 bits (140), Expect = 3e-24 Identities = 181/252 (72%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 124533 AATACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA 124591 |||||| ||| |||| || | ||||| | || || || || || ||| | || |||| Sbjct 1928 AATACACATGTAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTCGATGTTGA 1869 Query 124592 AGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACC 124651 ||| ||| | ||| ||| | || || ||| ||||||| |||||||| || || Sbjct 1868 AGCCTCTGACTCTATTGAAAATGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCC 1809 Query 124652 TGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGA 124711 |||| || |||| ||||||||||| || |||||| | || ||| | |||| | || Sbjct 1808 TGATTAATAAAGACTTATTTTTGCTGGTAAACAACTCGAAGATGGAAGAACTCTTTCCGA 1749 Query 124712 TTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TA 124770 || ||||||||||||||||| ||| | || || || ||| | ||| |||||||||| || Sbjct 1748 CTACAATATTCAAAAAGAATCTACTCTTCACTTAGTATTAAGATTAAGAGGTGGTATGTA 1689 Query 124771 AAAATTCATAAA 124782 | ||||| || Sbjct 1688 GATTTTCATTAA 1677 Score = 104 bits (114), Expect = 4e-17 Identities = 174/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| |||| ||| | || ||| | || || ||||| || ||| |||| ||||||| | Sbjct 1465 ATGTAAATCTTTGTTAAAACATTGACTGGTAAAACAATCACTCTAGATGTTGAAGCCTCT 1406 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | || || ||| ||||||| |||||||| || |||||| || Sbjct 1405 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1346 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||| || ||||| || || ||| || | || ||| | |||| | || || ||| Sbjct 1345 TAAAGACTCATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCTGACTACAAT 1286 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTCA 124778 |||||||| ||||| ||| | || || || || | ||| |||| ||| | || | | Sbjct 1285 ATTCAAAAGGAATCTACTCTTCACTTAGTATTGAGATTAAGAGGAGGTTCTTAA---TGA 1229 Query 124779 TAAAAATTGAT 124789 || |||||||| Sbjct 1228 TAGAAATTGAT 1218 Score = 96.9 bits (106), Expect = 5e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| | || || || ||||| | || || || || || ||| | || ||||||| | Sbjct 1693 ATGTAGATTTTCATTAAGACTTTGACTGGTAAGACCATTACTCTCGATGTTGAAGCCTCT 1634 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | || || ||| ||||||| |||||||| || |||||| || Sbjct 1633 GACTCTATTGAAAACGTCAAGGCTAAGATTTAAGATAAGGAAGGTATTCCTCCTGATTAA 1574 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||| |||||||| || || ||| || | || ||| | |||| | || || ||| Sbjct 1573 TAAAGACTTATTTTCGCTGGTAAATAACTTGAAGATGGAAGAACTCTTTCCGACTACAAT 1514 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772 |||||||| ||||| ||| | || || ||| | | || |||||||||| |||| Sbjct 1513 ATTCAAAAGGAATCTACTCTTCACTTAGTTCTTAGATTGAGAGGTGGTATGTAAA 1459 >seq121 Length=281021 Score = 109 bits (120), Expect = 8e-19 Identities = 233/340 (69%), Gaps = 16/340 (5%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||| || | ||||| || || | ||||| ||||| || || | || | | | | | Sbjct 223905 AATGTAACTTTTTATTAAAACTTTGACAGGTAAAACCATTACCCTTGAAACTAATGGATC 223846 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || ||||| ||| |||| || || ||| |||||||||||||||| || || || | Sbjct 223845 AGAAACAATAGAAAATGTTAAGGCA-AAGATTTAAGATAAAGAAGGTATTCCTCCAGACC 223787 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 || | || ||||||||||| || || || |||||||| | |||| | | || |||| Sbjct 223786 AATAGAGACTTATTTTTGCTGGTAAGTAACTAGAGGATGGAAGAACTATCTATGACTATA 223727 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||| ||||||| || || | || || || ||| | || ||||||| | | |||| Sbjct 223726 ATATCTAAAAAGACTCTACCCTTCACTTAGTGTTAAGGCTAAGAGGTGGCTGTTATAATT 223667 Query 124777 CATAAAAATTGATTGTAAATAA----ATATCACTACAAATAAT--TTTATCTGTTAtttt 124830 | || || || ||||||| | | | | ||||||| ||||| || || ||| Sbjct 223666 GAATAAGAT---TTATAAATAATTTTAAAATATTTAAAATAATCCTTTATATGATA-TTT 223611 Query 124831 tttATAAGATTTTGATGTTAATGCTTCATATAAATTATTT 124870 |||||| ||| |||| || | || ||| |||||||| Sbjct 223610 TTTATA--ATTGTGATTGTATT--TTATTATTAATTATTT 223575 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| |||||||| | || ||| |||| || || ||| | ||| |||| || | || Sbjct 224866 ATGTAAATATTTGTTAAAACATTAACTGGTAAGACTGTTACTCTAGATGTTTAGTCATCA 224807 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || ||| | ||| || || ||||||| |||||||| || |||||| | Sbjct 224806 GACTCTATAGAAAATATCAAAACTAAGATATAAGATAAGGAAGGTATCCCTCCTGATTAG 224747 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||| || |||||||| || || ||| | || ||| | |||| | || |||||| Sbjct 224746 TAAAGACTCATTTTTGCTGGTAAGCAACTTGAAGATGGAAGAACTATCTCTGACTATAAT 224687 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||||||| | ||||| ||| | | || |||||||||| Sbjct 224686 ATCTCAAAAGAATCAACCCTTCATTTAGTTCTTAGATTGAGAGGTGGTAT 224637 >seq41 Length=642683 Score = 98.7 bits (108), Expect = 2e-15 Identities = 106/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 124638 GAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGT 124697 |||||||| || |||||| ||||||| ||||| || || || || ||| | || ||| | Sbjct 166112 GAAGGTATTCCCCCTGATTAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGC 166171 Query 124698 CGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTA 124757 |||| | || |||||||||||||| ||||||||| | || || |||||| | ||| Sbjct 166172 AGAACTCTTTCTGACTATAATATTCAAAAGGAATCAACTCTTCACTTAGTTTTAAGATTA 166231 Query 124758 CGAGGTGG-TATTAAAAAT 124775 ||||||| || | ||||| Sbjct 166232 AGAGGTGGCTAATGAAAAT 166250 >seq21 Length=988075 Score = 87.8 bits (96), Expect = 3e-12 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||| | |||||| | || || |||| || ||||| || ||| |||| | | ||| Sbjct 18995 AATGTAGATATTTGTTAAAACCTTAACTGGAAAAACAATTACTTTAGATGCTC--GTAAA 18938 Query 124598 TGATACAATTTCTAA----TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 || |||| ||| ||||||| | ||||| ||||||||||||| ||||| || | Sbjct 18937 GAGGACTATTTTTAAGATATTTAAAATA--AAATTTAAGATAAAGAAGGAATACCTCCAG 18880 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 | ||| |||| ||||||||||| || | || || |||| | |||| ||| | Sbjct 18879 ACCAATAAAGACTTATTTTTGCTGGTTCATAACTATTTGATAACAAACCATTTAGAGAAT 18820 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || |||| | |||||| ||||||||||| || || | || |||| || Sbjct 18819 ATTATATATAGCCAGAATCTACTTTGCATTTAGTACTAAGATTGAGAGGAGG 18768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755452930960000