Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq77 123 4e-23 seq105 107 3e-18 seq121 105 1e-17 seq41 100 4e-16 seq21 98.7 1e-15 >seq77 Length=437778 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||||||||| || || | |||||||||||| ||||| || || ||| Sbjct 1695 CCACCTCTTAATCTTAATACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCGGAA 1754 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | |||||| ||||||||||| | ||||| | ||| |||||| Sbjct 1755 AGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGA 1814 Query 146171 ATTCCTTCTTTATCTT 146186 || ||||| ||||||| Sbjct 1815 ATACCTTCCTTATCTT 1830 Score = 111 bits (122), Expect = 2e-19 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| | ||| ||||| || || | ||||||||| ||| || ||||| || || || Sbjct 1239 CCTCCTCTTAATCTCAATACTAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAGTCAGA 1297 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||| | ||| || | || ||| ||||| ||||| | ||||| | ||| ||||| Sbjct 1298 AAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATGAGTCTTTATTAATCAGGAGG 1357 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| ||||||| || || || ||| || Sbjct 1358 AATACCTTCCTTATCTTAAATCTTAGCCTTGACGTTTTCAATAGAGTCAGAGGCTTCAAC 1417 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| |||||||||||||| || |||||||||| || |||| ||| Sbjct 1418 ATCTAGAGTGATTGTTTTACCAGTCAATGTTTTAACAAAGATTTACAT 1465 Score = 100 bits (110), Expect = 4e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| | || || || | ||||||||| ||| || ||||| || || || Sbjct 1467 CCACCTCTCAATCTAAGAACTAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAGTCGGA 1525 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||| | ||| || | || ||| ||||| ||||| | ||||| | ||| ||||| Sbjct 1526 AAGAGTTCTTCCATCTTCAAGTTATTTACCAGCGAAAATAAGTCTTTATTAATCAGGAGG 1585 Query 146170 AATTCCTTCTTTATCTT 146186 ||| ||||| ||||||| Sbjct 1586 AATACCTTCCTTATCTT 1602 >seq105 Length=326417 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| |||||||| || || || | ||||||||||| | |||||||| || || Sbjct 7567 CCACCTCTTAGTCTTAACACTAAGTGAAGGGTAGATTCTTTTTAGATATTATAGTCAGAG 7626 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || | ||| ||||| ||||| || | ||||| | ||| ||||| Sbjct 7627 ATAGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTATTAATCAGGAGGG 7686 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 7687 ATACCTTCCTTATCTTG 7703 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||| ||||| | ||| |||||||| | ||||||||||| || | |||||| | ||| Sbjct 8041 AATACTAAATGGAGAGTTGATTCTTTTTAGATATTATAATCAGAGATAGTTCTTCCATCT 8100 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | ||| ||||| |||||||| | ||||| | ||| ||||| || ||||| |||||| Sbjct 8101 TCAAGTTGCTTTCCTGCAAAAATAAGTCTTTATTAATCAGGAGGGATACCTTCCTTATCT 8160 Query 146186 TG 146187 || Sbjct 8161 TG 8162 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | || ||||| | || ||||||||||| || ||||| || || Sbjct 8254 CCACCTCTCAATCTAAGAACTAAATGGAGTGTTGATTCTTTAGAAATGTTATAGTCAGAG 8313 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | |||||| | || || ||||||||||| | ||||| | ||| ||||| Sbjct 8314 ATAGTTCTTCCATCATCGAGTTACTTACCAGCAAAAATAAGTCTTTATTAATCAGGAGGG 8373 Query 146171 ATTCCTTCTTTATCTT 146186 || ||||| ||||||| Sbjct 8374 ATACCTTCCTTATCTT 8389 >seq121 Length=281021 Score = 105 bits (116), Expect = 1e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||||||| || ||||| ||||| | ||||||||||| | ||||||||||| | Sbjct 223904 TTCCACCTCTAAGCCTCAATACTAAATGGATGGTAGATTCTTTTTAGATATTATAATCAG 223963 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||||| | ||| |||| || || ||||||||||| | ||||| | ||| |||| Sbjct 223964 ATATAGTTCTTCCATCTTCTAGTTACTTACCAGCAAAAATGAGTCTTTATTAATCAGGAG 224023 Query 146169 G 146169 | Sbjct 224024 G 224024 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | || ||||| | || |||||||| || |||||||| || || Sbjct 224640 CCACCTCTCAATCTAAGAACTAAATGAAGGGTTGATTCTTTTGAGATATTATAGTCAGAG 224699 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || | ||| || ||||||||||| | ||||| || ||| ||||| Sbjct 224700 ATAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAAAATGAGTCTTTACTAATCAGGAGGG 224759 Query 146171 ATTCCTTCTTTATCTT 146186 || ||||| ||||||| Sbjct 224760 ATACCTTCCTTATCTT 224775 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || ||||| || || || | ||||| ||||| | |||||||| || | Sbjct 223678 CCACCTCTTAGCCTTAACACTAAGTGAAGGGTAGAGTCTTTTTAGATATTATAGTCATAG 223737 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| |||| || || ||||||||||| | ||| | || || |||||| Sbjct 223738 ATAGTTCTTCCATCCTCTAGTTACTTACCAGCAAAAATAAGTCTCTATTGGTCTGGAGGA 223797 Query 146171 ATTCCTTCTTTATCTT 146186 || ||||||||||||| Sbjct 223798 ATACCTTCTTTATCTT 223813 >seq41 Length=642683 Score = 100 bits (110), Expect = 4e-16 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | |||||| || || || | ||| ||||| ||| || |||||||| || || Sbjct 166239 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGA-ATATTATAGTCAGA 166181 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||||| ||| || | ||| || ||||| || || | |||||| | ||| || || Sbjct 166180 AAGAGTTCTGCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTAATCAGGGGG 166121 Query 146170 AATTCCTTC 146178 ||| ||||| Sbjct 166120 AATACCTTC 166112 >seq21 Length=988075 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | ||||| ||| ||||| |||||||||||| |||||| ||| ||| Sbjct 18767 TCCTCCTCTCAATCTTAGTACTAAATGCAAAGTAGATTCTGGCTATATATAATATTCTCT 18826 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || | | || ||||| || || | ||||||||||| | ||||| || || ||||| Sbjct 18827 AAATGGTTTGTTATCAAATAGTTATGAACCAGCAAAAATAAGTCTTTATTGGTCTGGAGG 18886 Query 146170 AATTCCTTCTTTATCTT 146186 |||||||||||||||| Sbjct 18887 TATTCCTTCTTTATCTT 18903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743523379424000