Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 228 1e-54 seq28 136 5e-27 >seq2 Length=2195051 Score = 228 bits (252), Expect = 1e-54 Identities = 494/739 (67%), Gaps = 0/739 (0%) Strand=Plus/Minus Query 63155 TCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63214 ||| | ||| |||| ||| |||||| | ||| || || || |||||||||| Sbjct 428883 TCTACCTTCATTTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGG 428824 Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274 | || ||| ||||||| |||||||| | | ||| | ||| ||| | | |||| || Sbjct 428823 AAGTCCAGGGCATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTT 428764 Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 ||| || ||||| ||||||||||| || | |||| |||||| | ||| | ||| || || Sbjct 428763 CATGAAAAGATCGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTT 428704 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || |||||| || | | ||||| | | || |||||||||||| ||||| ||||| Sbjct 428703 ACCGTGATTCTTCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTA 428644 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 | ||| | || | ||| || || ||||| | |||||||| || | ||| Sbjct 428643 AACGGCAAAGGAACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATT 428584 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 | || | | ||| |||| || || || || |||||||| ||||| ||||| | Sbjct 428583 GAAGACACGGAGCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACT 428524 Query 63515 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 | || || | |||||| || || ||||| || || ||||| | ||||||||||| Sbjct 428523 ATCTCTAGCTCTGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAA 428464 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 || ||| | || | |||||||| || || |||||| ||| | ||| | ||||| Sbjct 428463 AGCACATTGCTTAAGAGTGTCATAAATACCGTCTATGGAATCTGCTTACATTTGAAGTAA 428404 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 ||||| ||| ||||| | | | ||| || | ||| || | ||||||| ||| || Sbjct 428403 GAAACAACTACTCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATG 428344 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754 || ||||| |||||| | || ||| || || | || || | ||| | | Sbjct 428343 AGTGAACCACTTTTCACTCATTAAATTATAAGTACGGAAGGCACTTTCCAAATCTCTCTT 428284 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 |||||| || | | || | ||||||||| | |||||||||||| ||||||| || Sbjct 428283 ATGAATACCAATAGAAACTCTCATTAACATTTATTGAGGTCTTTCAGCAATTTTACCATT 428224 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 | ||| || | || ||| | ||| || |||||||| | | || | | | || Sbjct 428223 CAATTTTAAAAGATAACTACGTTCGAGAGTCTTGAAACCAAAGAAATCATAAGTATAATC 428164 Query 63875 TCGTTCGTAAATAATAACC 63893 || || ||| |||||||| Sbjct 428163 TCTATCATAATTAATAACC 428145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 62756 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 |||||| || || || | |||| |||||||||||| |||||||||||||| |||| || Sbjct 429426 AATAAAGGCATCAGCAAGACCTTAAACACCAATACCAATAGGTCTATGTCTAATATTTGA 429367 Query 62816 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62856 ||| ||||||||||| ||| |||||||| ||| |||| Sbjct 429366 CTTTTTAGCTTCTGGAACAGGGTAATAATTTTCATCAATAA 429326 >seq28 Length=897071 Score = 136 bits (150), Expect = 5e-27 Identities = 404/617 (65%), Gaps = 6/617 (1%) Strand=Plus/Minus Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 ||||| |||||||| ||| || || || |||||| ||| | ||| || || || || Sbjct 62737 AAACAAGCGAAATCAGTGTGGAGGCCTTCATCTCTAGAAATGAGTTCATTGGAGAAGGTC 62678 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 | |||||||||| |||||| |||||||| || |||| | ||| || ||| Sbjct 62677 AAACCGGGCATTAAAGAACGCTTCTTAAGCCAGAAGATGGCACAGAAACTACCACTGAAG 62618 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33758 || || ||||| | |||||||| ||||| ||||| || | || ||| || Sbjct 62617 AATATACCTTCGATGGCAGCAAAAGCAATGAGTCTGGAAGCAAAGTTATCGTTGTTATTG 62558 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC-ACAAGG-CATCGTTTCTATGGCAT 33816 |||||||| ||||||| | |||||||| || | ||| || ||| ||| ||| | Sbjct 62557 ATCCACTTAAGAGCCCATTGAGCCTTCTTGTTAATGACAGGGACAT--TTTGAGAGGCCT 62500 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 | || || | | |||||| | ||| |||| ||| || || |||||||| || Sbjct 62499 TGAAAAGGAATTCCTTTTCAGTTTCATCCTTAATATAGGTGTCAATCAAAAGGGAGTAAG 62440 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 |||| || || || ||||| ||||| || | || || ||||| | ||| |||| | Sbjct 62439 TTTCAGAGTGGATATTTTCCATGGCAATTTAGAAACCATAGAAGGCACGAGCTTCGGGGA 62380 Query 33937 TCTGCACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | || ||||| ||| ||| || || | |||||| || || |||||| || Sbjct 62379 TTTGGACTTCAC-ACATGAATTACTCGGCGAGGTTTTCAAGGACGATACCATCAGAAGCA 62321 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055 || || || || | |||| ||| || || | ||||| || || | |||| Sbjct 62320 GCGAAGAAAGCAAGGACATATTTAATGAAGTGACGTTCGTTGTCAGTAAGACGTTCCCAA 62261 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 || || | ||||| | ||| ||| | ||| || | ||||| || || || | | || Sbjct 62260 TCCTTTAAATCTTGATATAAATCAATTTCGTCAGCAGTCCAGAAAGAAGCGAGTTCTTTC 62201 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||||| | ||||| | | |||| || ||||| | ||||| | || || ||| Sbjct 62200 TTGTACATTTCCCAGACCTTGTTGTATTTAATGGGGAAGAGGACAAAACGGTTAGGGTTT 62141 Query 34176 GGTGCAAGGATAGGTTC 34192 ||||||||||| Sbjct 62140 TCCTTGAGGATAGGTTC 62124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815041366000