Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 >seq2 Length=2195051 Score = 125 bits (138), Expect = 7e-24 Identities = 390/598 (65%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 36982 TTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTA-- 37039 |||||||||| |||||||| |||||||| | || || |||| ||| || | ||| Sbjct 429956 TTTTGAGATACTTCCCAAACTGTTTTATAGAGTTACTTAATATCATCGGGAATATCAGCT 429897 Query 37040 AATGTT-GAATAGAACCATTATGTAACACAATTGT--ATTCTTTATGTCATTATTCCACA 37096 | |||| ||| ||| ||||| |||| | || ||| || || | |||||| | Sbjct 429896 ATTGTTTGAACAGAGCCATT--GTAAGCAAGGAGTTAATTTTTAATTGAAGGATTCCAAA 429839 Query 37097 TATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATT--TACAACCTGAAAATCTCCAGA 37154 |||||| |||| ||| | || || ||||| ||||| | ||| || |||| Sbjct 429838 GATTTCTTTCAATTAAATCTTAAACAAGATGAGGATTGATACAAAC--AAATTCACCAGC 429781 Query 37155 TAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAA 37214 | ||||| | ||||| | |||| |||||| ||||||| || || ||||| || Sbjct 429780 AAGGACTCTACGGGTATAAAGATTGGAAGTATAGGGTTCAAATGATTCGCAATTACCCAA 429721 Query 37215 TATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATG 37274 || | ||| ||||| ||||||||||| || || || | ||| ||| | || ||||| Sbjct 429720 AATCTAAGAGGTAGAAGCAGTAGGCATAGGAGCAATCAAAAGAGAATTACGCATACCATG 429661 Query 37275 TGTATTAATTCTCTTTTTTAGTTCATTCCAATC-------CCATAAATCTGTTGGGTTCT 37327 | | |||| | || || | ||| |||||| ||||||| || || | Sbjct 429660 TTCAACAATTTTTTTCTTCAAACCATCCCAATCGTATCCACCATAAA----CAGGCTTAT 429605 Query 37328 TTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCAT 37387 ||| | ||| ||| || ||| || || ||||| | || |||| |||| Sbjct 429604 AGTTCCATAAATCGAATTAGAGTTGACCCTTTGAAGCAGGAGATCCCTTGAATGTTTCAT 429545 Query 37388 AAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTT 37447 ||| ||| | || |||| | ||| | || ||| || || |||| ||||||| Sbjct 429544 AAGCTCCTTCCTTTATAGCAATTTCCATAGAAGCTTCACAAGCACCAAAATAGATTGTTT 429485 Query 37448 CGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATA 37507 |||| ||| | ||| | || | ||||| || || ||||| | | | || | Sbjct 429484 CGAAGATTCTTTCATTAATAATCTAAGCTTCGTCACTTTCGAAAGAAATTCTCATCTTAA 429425 Query 37508 TAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA 37565 |||| ||||||| | ||| | |||||| ||||| || ||||||||| | |||| || Sbjct 429424 TAAAGGCATCAGCAAGACCTTAAACACCAATACCAATAGGTCTATGTCTAATATTTGA 429367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522896618000