Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 seq28 141 1e-28 >seq2 Length=2195051 Score = 205 bits (226), Expect = 1e-47 Identities = 469/706 (66%), Gaps = 0/706 (0%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||| || || || |||||||||| | |||||| ||||||| |||||||| | | Sbjct 428850 TTCAAATTCATCACCCCAAACATCAGGAAGTCCAGGGCATTCATTAGGACACATAAGAGT 428791 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| | ||| ||| | | |||| ||||| || ||||| ||||||||||| || | || Sbjct 428790 CCATTTTCCATCAGCAATGACTCTCTTCATGAAAAGATCGGGAATCCAAAGTGCAAAGAA 428731 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 ||||||||| | ||| | ||| || || || |||||| || | | ||||| | | Sbjct 428730 TAAATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCTTCTTCAACTAAAGGAAGTCGAA 428671 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 || |||| ||||||| ||||| ||||| | ||| | || | ||| || || Sbjct 428670 AACATCAGAATGCCAAGGTTCTAAGTAAACGGCAAAGGAACCCTTTCTCTTGCCACCACC 428611 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||||| | |||||||| || | ||| | || | | ||| |||| || ||||| || Sbjct 428610 TTGATCAACATATCTAGCAGTATCATTGAAGACACGGAGCATAGGAACAAGTCCATTAGA 428551 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 ||||||| || || ||||| || | || || | |||||| || || ||||| Sbjct 428550 AATACCATTTGTACCTCTAATATAACTATCTCTAGCTCTGATATTATGAACGGAAAGACC 428491 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || ||||| | ||||||||||| || ||| | || | || ||||| || || || Sbjct 428490 AATACCACCTGCACTCTTAGAGATTAAAGCACATTGCTTAAGAGTGTCATAAATACCGTC 428431 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 ||| ||| | ||| | ||||| ||||| ||| ||||| | | ||| || Sbjct 428430 TATGGAATCTGCTTACATTTGAAGTAAGAAACAACTACTCATTTAGGGCTTGGGAGTACC 428371 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 | ||| || | ||||||| ||| || || ||||| |||||| | || ||| || || Sbjct 428370 TGAATTGAAAAGAGTAGGAGTAGCATGAGTGAACCACTTTTCACTCATTAAATTATAAGT 428311 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 | || || | ||| | | |||||| || | | || | ||||||||| | Sbjct 428310 ACGGAAGGCACTTTCCAAATCTCTCTTATGAATACCAATAGAAACTCTCATTAACATTTA 428251 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 |||||||||||| | || || || | ||| || | || ||| | ||| || Sbjct 428250 TTGAGGTCTTTCAGCAATTTTACCATTCAATTTTAAAAGATAACTACGTTCGAGAGTCTT 428191 Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 66686 |||||||| | | || | | | |||| || ||| |||||||| Sbjct 428190 GAAACCAAAGAAATCATAAGTATAATCTCTATCATAATTAATAACC 428145 Score = 93.3 bits (102), Expect = 6e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 65549 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608 |||||| || || || | |||| |||||||||||| |||||||||||||| |||| || Sbjct 429426 AATAAAGGCATCAGCAAGACCTTAAACACCAATACCAATAGGTCTATGTCTAATATTTGA 429367 Query 65609 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 65649 ||| ||||||||||| ||| |||||||| ||| |||| Sbjct 429366 CTTTTTAGCTTCTGGAACAGGGTAATAATTTTCATCAATAA 429326 >seq28 Length=897071 Score = 141 bits (156), Expect = 1e-28 Identities = 492/753 (65%), Gaps = 30/753 (4%) Strand=Plus/Minus Query 36031 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 ||||||||| ||||||| || || ||||| | | | ||||| | ||||||| ||| Sbjct 62861 ATTCATTCCAATAAGTTCGACGGGGAGAGCTTCTGAGATGAATTCCTTTTCAATATCGAC 62802 Query 36091 CGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA- 36149 || || | ||||| | ||| | ||||||| | |||| | | || ||||| Sbjct 62801 AGCTTCAATGATAAT-GTTATAGAT--TTCTTCATT-GGTGAGTTTATTA----TTTAAC 62750 Query 36150 -------ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 | | ||||| |||||||| ||| || || || |||||| ||| | ||| Sbjct 62749 ATGGAGTATAATAAACAAGCGAAATCAGTGTGGAGGCCTTCATCTCTAGAAATGAGTTCA 62690 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAA 36261 ||||| || || | |||||||||| |||||| |||||||| || |||| || ||| Sbjct 62689 TTGGAGAAGGTCAAACCGGGCATTAAAGAACGCTTCTTAAGCCAGAAGATGGCACAGAAA 62630 Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 36321 | ||| ||||| || ||||| | || ||||| ||||| ||||| || | Sbjct 62629 CTA-CCACTGAAGAATATACCTTCGATGGCAGCAAAAGCAATGAGTCTGGAAGCAAAGTT 62571 Query 36322 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC-ACAAGG-CATT 36379 | ||| || |||||||| ||||||| | |||||||| || | ||| || |||| Sbjct 62570 ATCGTTGTTATTGATCCACTTAAGAGCCCATTGAGCCTTCTTGTTAATGACAGGGACATT 62511 Query 36380 GTCTCTATAG-CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 | | || | || || || | | |||||| | ||| |||| ||| || ||||| Sbjct 62510 TTG---AGAGGCCTTGAAAAGGAATTCCTTTTCAGTTTCATCCTTAATATAGGTGTCAAT 62454 Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498 |||||| || |||| || || || ||||| ||||| |||| || || ||||| Sbjct 62453 CAAAAGGGAGTAAGTTTCAGAGTGGATATTTTCCATGGCAATTTAGAAACCATAGAAGGC 62394 Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTA 36557 | ||| |||| || || ||||| ||| ||| || || | |||||| || | Sbjct 62393 ACGAGCTTCGGGGATTTGGACTTC-ACACATGAATTACTCGGCGAGGTTTTCAAGGACGA 62335 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||| || || || || || | |||| ||| || || | |||||| | Sbjct 62334 TACCATCAGAAGCAGCGAAGAAAGCAAGGACATATTTAATGAAGTGACGTTCGTTGTCAG 62275 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | || | |||||| || | ||||| | ||| ||| | ||| || | ||||| || | Sbjct 62274 TAAGACGTTCCCAATCCTTTAAATCTTGATATAAATCAATTTCGTCAGCAGTCCAGAAAG 62215 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 | || | | || || ||||| | ||||| | | |||| ||| || || | |||| Sbjct 62214 AAGCGAGTTCTTTCTTGTACATTTCCCAGACCTTGTTGTATTTAATGGGGAAGAGGACAA 62155 Query 36738 ATCTATTTTGATTTT--TTGCAAGGATTGGTTC 36768 | | || | |||| ||| ||||| ||||| Sbjct 62154 AACGGTTAGGGTTTTCCTTG--AGGATAGGTTC 62124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170126173000