Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 244 2e-59 >seq2 Length=2195051 Score = 244 bits (270), Expect = 2e-59 Identities = 491/728 (67%), Gaps = 0/728 (0%) Strand=Plus/Minus Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 |||| |||| ||||| | ||| || || || ||||||||||| | |||||| | Sbjct 428872 TTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGGAAGTCCAGGGC 428813 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 |||| | ||||||||| | | ||| | ||||||| | | |||| ||||| || |||| Sbjct 428812 ATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTTCATGAAAAGAT 428753 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 | ||||||||||| || | |||| |||||| | ||| | || || || || ||||| Sbjct 428752 CGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCT 428693 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | || | | ||||| | | || |||||||||||| ||||| ||||| | ||| | Sbjct 428692 TCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTAAACGGCAAAGG 428633 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 ||| || ||| || || ||||| | |||||||| || | ||| | || | | Sbjct 428632 AACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATTGAAGACACGGA 428573 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 ||| |||| || ||||| || ||||||| || || ||||| || | || || | Sbjct 428572 GCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACTATCTCTAGCTC 428513 Query 80198 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 80257 |||||| || || ||||| || || ||||| | ||||||||||| || ||| | | Sbjct 428512 TGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAAAGCACATTGCT 428453 Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAG 80317 | | || ||||| || || |||||| ||| | ||| | ||||| ||||| ||| Sbjct 428452 TAAGAGTGTCATAAATACCGTCTATGGAATCTGCTTACATTTGAAGTAAGAAACAACTAC 428393 Query 80318 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 80377 ||||| | | ||| || | ||| || | ||||||| ||| || || ||||| | Sbjct 428392 TCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATGAGTGAACCACT 428333 Query 80378 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTA 80437 ||||| || || ||| || || | || ||| | ||| | | |||||| || | Sbjct 428332 TTTCACTCATTAAATTATAAGTACGGAAGGCACTTTCCAAATCTCTCTTATGAATACCAA 428273 Query 80438 CCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 80497 | || | ||||||||| | |||||||||||| | || || ||| | ||| || | Sbjct 428272 TAGAAACTCTCATTAACATTTATTGAGGTCTTTCAGCAATTTTACCATTCAATTTTAAAA 428213 Query 80498 AGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 80557 ||| ||| | ||| || |||||||| | | || | | | |||| || ||| Sbjct 428212 GATAACTACGTTCGAGAGTCTTGAAACCAAAGAAATCATAAGTATAATCTCTATCATAAT 428153 Query 80558 TAATAACC 80565 |||||||| Sbjct 428152 TAATAACC 428145 Score = 132 bits (146), Expect = 7e-26 Identities = 482/745 (65%), Gaps = 12/745 (2%) Strand=Plus/Minus Query 78793 TAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 78852 ||||| |||||| || | || || || ||||| | ||||| ||||| | |||| Sbjct 430067 TAGAAGTGCATAGAGGTAATCTTAGAGTATGAGGGATCAGAGATATGAATATTAAGAGAT 430008 Query 78853 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 78912 | | || || || || | | | | | |||| | || || || | |||||| | Sbjct 430007 TAAGATTAGTCAATAAAAGGACTACGGCCAACAGCGAGATTAATAATAGCCTTTTGAGAT 429948 Query 78913 ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG-TATTCT--GA 78969 | |||||||| |||||||| | | ||||||||| || |||| | | |||| | || Sbjct 429947 ACTTCCCAAACTGTTTTATAGAGTTACTTAATATCATCGGGAATATCAGCTATTGTTTGA 429888 Query 78970 ATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCG 79029 | || ||| | || | | ||| || || |||||| | ||||| || Sbjct 429887 ACAGAGCCATTGTAAGCAAGGAGTTAATTTTTAATTGAAGGATTCCAAAGATTTCTTTCA 429828 Query 79030 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTG-AAATTCTCCAGACAATACTCTCCG 79088 ||||| || || ||||| ||||| | ||| |||||| |||| | ||||| || Sbjct 429827 ATTAAATCTTAAACAAGATGAGGATTGA-TACAAACAAATTCACCAGCAAGGACTCTACG 429769 Query 79089 AGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGT 79148 || |||| ||| ||||| ||||| | ||||| ||| |||||||| | || || Sbjct 429768 GGTATAAAGATTGGAAGTATAGGGTTCAAATGATTCGCAATTACCCAAAATCTAAGAGGT 429709 Query 79149 TGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATT 79206 || || || |||||||| || | ||| | | ||| | | ||| ||| || ||| Sbjct 429708 AGAAGCAGTAGGCATAGGAGCAATCAAAAGAGAATTACGCATACC--ATGTTCAACAATT 429651 Query 79207 TTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA--CGGGACAACA-TTCCAAAGATCA 79263 || | || | | |||||||| | | || | | || | | ||||| | ||| Sbjct 429650 TTTTTCTTCAAACCATCCCAATCGTATCCACCATAAACAGGCTTATAGTTCCATAAATCG 429591 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 ||| || ||| || ||| ||||| || |||||||||||| |||||||||| Sbjct 429590 AATTAGAGTTGACCCTTTGAAGCAGGAGATCCCTTGAATGTTTCATAAGCTCCTTCCTTT 429531 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 || | ||| | || || | || || |||| || |||||||| || | | | Sbjct 429530 ATAGCAATTTCCATAGAAGCTTCACAAGCACCAAAATAGATTGTTTCGAAGATTCTTTCA 429471 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 || | | | ||||| || || || | | | | |||||| || || || Sbjct 429470 TTAATAATCTAAGCTTCGTCACTTTCGAAAGAAATTCTCATCTTAATAAAGGCATCAGCA 429411 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 | |||| |||||||||||| |||||||||||||| |||| || ||| |||||||||| Sbjct 429410 AGACCTTAAACACCAATACCAATAGGTCTATGTCTAATATTTGACTTTTTAGCTTCTGGA 429351 Query 79504 ATAGGATAATAATTAATATCTATAA 79528 | ||| |||||||| ||| |||| Sbjct 429350 ACAGGGTAATAATTTTCATCAATAA 429326 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 79617 GACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGT 79676 || ||| || | ||| ||||| || ||||||| || | | |||| | |||||||| Sbjct 429154 GATAGAAGCTAAATTGCAAACTGCAACCTCATCAGGGGCAGTGTATTCAACAATTTCAGT 429095 Query 79677 GCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 79736 |||||||||| || ||||| || |||| |||| |||||| |||| |||| || || Sbjct 429094 GCAGAGGTTAGAACTTTTAATTGTACCTAGGTTTTATTGATTTGACTTTCTGTTGCAAGC 429035 Query 79737 ATCCTTATAAAGAATGAACGGAGTACCAGTTTCAAT 79772 |||||| || || ||| | ||||| || ||||| || Sbjct 429034 ATCCTTGTAGAGCATGTAGGGAGTGCCCGTTTCTAT 428999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265882033000