Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetrahymena_20borealis_20[genbank_20GCA_5F000260095.1_202012-05-01] 325 sequences; 93,506,076 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 217 2e-51 >seq2 Length=2195051 Score = 217 bits (240), Expect = 2e-51 Identities = 485/728 (67%), Gaps = 0/728 (0%) Strand=Plus/Minus Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGAC 71980 |||| |||| ||||| | ||| || || || |||||| ||| | |||||| | Sbjct 428872 TTTCATATTTAGTATAAAGAGCTTCAAATTCATCACCCCAAACATCAGGAAGTCCAGGGC 428813 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040 ||||||| |||||||| | | ||| | ||||||| || | |||| ||||| || |||| Sbjct 428812 ATTCATTAGGACACATAAGAGTCCATTTTCCATCAGCAATGACTCTCTTCATGAAAAGAT 428753 Query 72041 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 72100 | ||||||||||| || | |||| |||||| | ||| | || || || || ||||| Sbjct 428752 CGGGAATCCAAAGTGCAAAGAATAAATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCT 428693 Query 72101 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 72160 | || | | ||||| | | || |||||||||||| ||||| ||||| | ||| | Sbjct 428692 TCTTCAACTAAAGGAAGTCGAAAACATCAGAATGCCAAGGTTCTAAGTAAACGGCAAAGG 428633 Query 72161 CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 72220 ||| | ||| || || ||||| | |||||||| || | ||| | || | | Sbjct 428632 AACCCTTTCTCTTGCCACCACCTTGATCAACATATCTAGCAGTATCATTGAAGACACGGA 428573 Query 72221 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 72280 ||| |||| || ||||| || |||||| || || ||||| || | || || | Sbjct 428572 GCATAGGAACAAGTCCATTAGAAATACCATTTGTACCTCTAATATAACTATCTCTAGCTC 428513 Query 72281 GAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340 ||||| || || ||||| || || ||||| | ||||||||||| || ||| | | Sbjct 428512 TGATATTATGAACGGAAAGACCAATACCACCTGCACTCTTAGAGATTAAAGCACATTGCT 428453 Query 72341 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 72400 | | || ||||| || || ||||| ||| | ||| | ||||| ||||| ||| Sbjct 428452 TAAGAGTGTCATAAATACCGTCTATGGAATCTGCTTACATTTGAAGTAAGAAACAACTAC 428393 Query 72401 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 72460 ||||| | | ||| || | ||| || | ||||||| ||| || || ||||| | Sbjct 428392 TCATTTAGGGCTTGGGAGTACCTGAATTGAAAAGAGTAGGAGTAGCATGAGTGAACCACT 428333 Query 72461 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTA 72520 ||||| || || ||| || || | || ||| | ||| | | ||| || || | Sbjct 428332 TTTCACTCATTAAATTATAAGTACGGAAGGCACTTTCCAAATCTCTCTTATGAATACCAA 428273 Query 72521 CCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 72580 | || | ||||||||| | |||||||||||| | || || ||| | ||| || | Sbjct 428272 TAGAAACTCTCATTAACATTTATTGAGGTCTTTCAGCAATTTTACCATTCAATTTTAAAA 428213 Query 72581 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 72640 || ||| | ||| || |||||||| | | || | | | |||| || ||| Sbjct 428212 GATAACTACGTTCGAGAGTCTTGAAACCAAAGAAATCATAAGTATAATCTCTATCATAAT 428153 Query 72641 TAATAACC 72648 |||||||| Sbjct 428152 TAATAACC 428145 Score = 100 bits (110), Expect = 4e-16 Identities = 216/318 (68%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 70967 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAA 71026 |||| | || || || | |||||| | | |||||||| |||||||| | | ||||| Sbjct 429976 CAGCGAGATTAATAATAGCCTTTTGAGATACTTCCCAAACTGTTTTATAGAGTTACTTAA 429917 Query 71027 TATCTTCTGGAAGGTTTG-TATTCT--GAATGGATCCACCATCTGCAATAATCCTATTTT 71083 |||| || |||| | | |||| | ||| || ||| | |||| | ||||| Sbjct 429916 TATCATCGGGAATATCAGCTATTGTTTGAACAGAGCCATTGTAAGCAAGGAGTTAATTTT 429857 Query 71084 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTA 71143 | || |||||| | ||||| || ||||| || || ||||||||||| | || Sbjct 429856 TAATTGAAGGATTCCAAAGATTTCTTTCAATTAAATCTTAAACAAGATGAGGATTGA-TA 429798 Query 71144 C-TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 | |||||| |||| | |||||||| || |||| ||| ||||| ||||| | | Sbjct 429797 CAAACAAATTCACCAGCAAGGACTCTACGGGTATAAAGATTGGAAGTATAGGGTTCAAAT 429738 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || || ||| |||||||| | || || || ||||| |||||||| || | ||| ||| Sbjct 429737 GATTCGCAATTACCCAAAATCTAAGAGGTAGAAGCAGTAGGCATAGGAGCAATCAAAAGA 429678 Query 71263 CTATTTCTAAGACCATGT 71280 ||| | | ||||||| Sbjct 429677 GAATTACGCATACCATGT 429660 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 |||||| || || || | |||| ||| |||||||| |||||||| ||||| |||| || Sbjct 429426 AATAAAGGCATCAGCAAGACCTTAAACACCAATACCAATAGGTCTATGTCTAATATTTGA 429367 Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 71611 ||| ||||||||||| ||| |||||||| ||| |||| Sbjct 429366 CTTTTTAGCTTCTGGAACAGGGTAATAATTTTCATCAATAA 429326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136473497000